ch07-dimer-det.xml

<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1">
  <model id="DimerKineticsDet" name="Dimerisation Kinetics (deterministic)" substanceUnits="mole" timeUnits="second" volumeUnits="litre" extentUnits="mole">
    <listOfCompartments>
      <compartment id="Cell" size="1e-15"/>
    </listOfCompartments>
    <listOfSpecies>
      <species id="P" compartment="Cell" initialConcentration="5e-07"/>
      <species id="P2" compartment="Cell" initialConcentration="0"/>
    </listOfSpecies>
    <listOfReactions>
      <reaction id="Dimerisation" reversible="false">
        <listOfReactants>
          <speciesReference species="P" stoichiometry="2"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="P2" stoichiometry="1"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> Cell </ci>
              <ci> k1 </ci>
              <ci> P </ci>
              <ci> P </ci>
            </apply>
          </math>
          <listOfLocalParameters>
            <localParameter id="k1" value="500000"/>
          </listOfLocalParameters>
        </kineticLaw>
      </reaction>
      <reaction id="Dissociation" reversible="false">
        <listOfReactants>
          <speciesReference species="P2" stoichiometry="1"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="P" stoichiometry="2"/>
        </listOfProducts>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <times/>
              <ci> Cell </ci>
              <ci> k2 </ci>
              <ci> P2 </ci>
            </apply>
          </math>
          <listOfLocalParameters>
            <localParameter id="k2" value="0.2"/>
          </listOfLocalParameters>
        </kineticLaw>
      </reaction>
    </listOfReactions>
  </model>
</sbml>