diff --git a/docs/api-lazy.md b/docs/api-lazy.md new file mode 100644 index 00000000..abea5cbb --- /dev/null +++ b/docs/api-lazy.md @@ -0,0 +1,15 @@ +# Tools for lazy backends + +These additional functions are meant to be used to support compatibility with +lazy backends, e.g. Dask or JAX: + +```{eval-rst} +.. currentmodule:: array_api_extra +.. autosummary:: + :nosignatures: + :toctree: generated + + lazy_apply + testing.lazy_xp_function + testing.patch_lazy_xp_functions +``` diff --git a/docs/index.md b/docs/index.md index ae15c7f4..d72c40ef 100644 --- a/docs/index.md +++ b/docs/index.md @@ -5,7 +5,7 @@ :hidden: self api-reference.md -testing-utils.md +api-lazy.md contributing.md contributors.md ``` diff --git a/docs/testing-utils.md b/docs/testing-utils.md deleted file mode 100644 index 49aeb306..00000000 --- a/docs/testing-utils.md +++ /dev/null @@ -1,14 +0,0 @@ -# Testing Utilities - -These additional functions are meant to be used while unit testing Array API -compliant packages: - -```{eval-rst} -.. currentmodule:: array_api_extra.testing -.. autosummary:: - :nosignatures: - :toctree: generated - - lazy_xp_function - patch_lazy_xp_functions -``` diff --git a/pixi.lock b/pixi.lock index f07416e6..37b2ca15 100644 --- a/pixi.lock +++ b/pixi.lock @@ -7,9 +7,8 @@ environments: - https://pypi.org/simple packages: linux-64: - - conda: https://prefix.dev/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 - - conda: https://prefix.dev/conda-forge/linux-64/_openmp_mutex-4.5-2_kmp_llvm.tar.bz2 - - conda: https://prefix.dev/conda-forge/noarch/array-api-compat-1.11.1-pyhd8ed1ab_0.conda + - conda: https://prefix.dev/conda-forge/linux-64/_openmp_mutex-4.5-3_kmp_llvm.conda + - conda: https://prefix.dev/conda-forge/noarch/array-api-compat-1.11.1-pyh29332c3_1.conda - conda: https://prefix.dev/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda - conda: https://prefix.dev/conda-forge/linux-64/ca-certificates-2025.1.31-hbcca054_0.conda - conda: https://prefix.dev/conda-forge/linux-64/ld_impl_linux-64-2.43-h712a8e2_4.conda @@ -19,7 +18,7 @@ environments: - 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slices: list[slice] = [] # type: ignore[no-any-explicit] + slices: list[slice] = [] # type: ignore[explicit-any] newshape: list[int] = [] for ax, w_tpl in enumerate(pad_width_seq): if len(w_tpl) != 2: diff --git a/src/array_api_extra/_lib/_lazy.py b/src/array_api_extra/_lib/_lazy.py new file mode 100644 index 00000000..14117634 --- /dev/null +++ b/src/array_api_extra/_lib/_lazy.py @@ -0,0 +1,361 @@ +"""Public API Functions.""" + +# https://github.com/scikit-learn/scikit-learn/pull/27910#issuecomment-2568023972 +from __future__ import annotations + +import math +from collections.abc import Callable, Sequence +from functools import partial, wraps +from types import ModuleType +from typing import TYPE_CHECKING, Any, cast, overload + +from ._funcs import broadcast_shapes +from ._utils import _compat +from ._utils._compat import ( + array_namespace, + is_dask_namespace, + is_jax_namespace, +) +from ._utils._helpers import is_python_scalar +from ._utils._typing import Array, DType + +if TYPE_CHECKING: # pragma: no cover + # TODO move outside TYPE_CHECKING + # depends on scikit-learn abandoning Python 3.9 + # https://github.com/scikit-learn/scikit-learn/pull/27910#issuecomment-2568023972 + from typing import ParamSpec, TypeAlias + + import numpy as np + from numpy.typing import ArrayLike + + NumPyObject: TypeAlias = np.ndarray[Any, Any] | np.generic # type: ignore[explicit-any] + P = ParamSpec("P") +else: + # Sphinx hacks + NumPyObject = Any + + class P: # pylint: disable=missing-class-docstring + args: tuple + kwargs: dict + + +@overload +def lazy_apply( # type: ignore[decorated-any, valid-type] + func: Callable[P, Array | ArrayLike], + *args: Array | complex | None, + shape: tuple[int | None, ...] | None = None, + dtype: DType | None = None, + as_numpy: bool = False, + xp: ModuleType | None = None, + **kwargs: P.kwargs, # pyright: ignore[reportGeneralTypeIssues] +) -> Array: ... # numpydoc ignore=GL08 + + +@overload +def lazy_apply( # type: ignore[decorated-any, valid-type] + func: Callable[P, Sequence[Array | ArrayLike]], + *args: Array | complex | None, + shape: Sequence[tuple[int | None, ...]], + dtype: Sequence[DType] | None = None, + as_numpy: bool = False, + xp: ModuleType | None = None, + **kwargs: P.kwargs, # pyright: ignore[reportGeneralTypeIssues] +) -> tuple[Array, ...]: ... # numpydoc ignore=GL08 + + +def lazy_apply( # type: ignore[valid-type] # numpydoc ignore=GL07,SA04 + func: Callable[P, Array | ArrayLike | Sequence[Array | ArrayLike]], + *args: Array | complex | None, + shape: tuple[int | None, ...] | Sequence[tuple[int | None, ...]] | None = None, + dtype: DType | Sequence[DType] | None = None, + as_numpy: bool = False, + xp: ModuleType | None = None, + **kwargs: P.kwargs, # pyright: ignore[reportGeneralTypeIssues] +) -> Array | tuple[Array, ...]: + """ + Lazily apply an eager function. + + If the backend of the input arrays is lazy, e.g. Dask or jitted JAX, the execution + of the function is delayed until the graph is materialized; if it's eager, the + function is executed immediately. + + Parameters + ---------- + func : callable + The function to apply. + + It must accept one or more array API compliant arrays as positional arguments. + If `as_numpy=True`, inputs are converted to NumPy before they are passed to + `func`. + It must return either a single array-like or a sequence of array-likes. + + `func` must be a pure function, i.e. without side effects, as depending on the + backend it may be executed more than once or never. + *args : Array | int | float | complex | bool | None + One or more Array API compliant arrays, Python scalars, or None's. + + If `as_numpy=True`, you need to be able to apply :func:`numpy.asarray` to + non-None args to convert them to numpy; read notes below about specific + backends. + shape : tuple[int | None, ...] | Sequence[tuple[int | None, ...]], optional + Output shape or sequence of output shapes, one for each output of `func`. + Default: assume single output and broadcast shapes of the input arrays. + dtype : DType | Sequence[DType], optional + Output dtype or sequence of output dtypes, one for each output of `func`. + dtype(s) must belong to the same array namespace as the input arrays. + Default: infer the result type(s) from the input arrays. + as_numpy : bool, optional + If True, convert the input arrays to NumPy before passing them to `func`. + This is particularly useful to make numpy-only functions, e.g. written in Cython + or Numba, work transparently with array API-compliant arrays. + Default: False. + xp : array_namespace, optional + The standard-compatible namespace for `args`. Default: infer. + **kwargs : Any, optional + Additional keyword arguments to pass verbatim to `func`. + They cannot contain Array objects. + + Returns + ------- + Array | tuple[Array, ...] + The result(s) of `func` applied to the input arrays, wrapped in the same + array namespace as the inputs. + If shape is omitted or a single `tuple[int | None, ...]`, return a single array. + Otherwise, return a tuple of arrays. + + Notes + ----- + JAX + This allows applying eager functions to jitted JAX arrays, which are lazy. + The function won't be applied until the JAX array is materialized. + When running inside ``jax.jit``, `shape` must be fully known, i.e. it cannot + contain any `None` elements. + + .. warning:: + + `func` must never raise inside ``jax.jit``, as the resulting behavior is + undefined. + + Using this with `as_numpy=False` is particularly useful to apply non-jittable + JAX functions to arrays on GPU devices. + If ``as_numpy=True``, the :doc:`jax:transfer_guard` may prevent arrays on a GPU + device from being transferred back to CPU. This is treated as an implicit + transfer. + + PyTorch, CuPy + If ``as_numpy=True``, these backends raise by default if you attempt to convert + arrays on a GPU device to NumPy. + + Sparse + If ``as_numpy=True``, by default sparse prevents implicit densification through + :func:`numpy.asarray`. `This safety mechanism can be disabled + `_. + + Dask + This allows applying eager functions to dask arrays. + The dask graph won't be computed. + + `lazy_apply` doesn't know if `func` reduces along any axes; also, shape + changes are non-trivial in chunked Dask arrays. For these reasons, all inputs + will be rechunked into a single chunk. + + .. warning:: + + The whole operation needs to fit in memory all at once on a single worker. + + The outputs will also be returned as a single chunk and you should consider + rechunking them into smaller chunks afterwards. + + If you want to distribute the calculation across multiple workers, you + should use :func:`dask.array.map_blocks`, :func:`dask.array.map_overlap`, + :func:`dask.array.blockwise`, or a native Dask wrapper instead of + `lazy_apply`. + + Dask wrapping around other backends + If ``as_numpy=False``, `func` will receive in input eager arrays of the meta + namespace, as defined by the ``._meta`` attribute of the input Dask arrays. + The outputs of `func` will be wrapped by the meta namespace, and then wrapped + again by Dask. + + Raises + ------ + ValueError + When ``xp=jax.numpy``, the output `shape` is unknown (it contains ``None`` on + one or more axes) and this function was called inside ``jax.jit``. + RuntimeError + When ``xp=sparse`` and auto-densification is disabled. + Exception (backend-specific) + When the backend disallows implicit device to host transfers and the input + arrays are on a non-CPU device, e.g. on GPU. + + See Also + -------- + jax.transfer_guard + jax.pure_callback + dask.array.map_blocks + dask.array.map_overlap + dask.array.blockwise + """ + args_not_none = [arg for arg in args if arg is not None] + array_args = [arg for arg in args_not_none if not is_python_scalar(arg)] + if not array_args: + msg = "Must have at least one argument array" + raise ValueError(msg) + if xp is None: + xp = array_namespace(*args) + + # Normalize and validate shape and dtype + shapes: list[tuple[int | None, ...]] + dtypes: list[DType] + multi_output = False + + if shape is None: + shapes = [broadcast_shapes(*(arg.shape for arg in array_args))] + elif all(isinstance(s, int | None) for s in shape): + # Do not test for shape to be a tuple + # https://github.com/data-apis/array-api/issues/891#issuecomment-2637430522 + shapes = [cast(tuple[int | None, ...], shape)] + else: + shapes = list(shape) # type: ignore[arg-type] # pyright: ignore[reportAssignmentType] + multi_output = True + + if dtype is None: + dtypes = [xp.result_type(*args_not_none)] * len(shapes) + elif multi_output: + if not isinstance(dtype, Sequence): + msg = "Got multiple shapes but only one dtype" + raise ValueError(msg) + dtypes = list(dtype) # pyright: ignore[reportUnknownArgumentType] + else: + if isinstance(dtype, Sequence): + msg = "Got single shape but multiple dtypes" + raise ValueError(msg) + + dtypes = [dtype] + + if len(shapes) != len(dtypes): + msg = f"Got {len(shapes)} shapes and {len(dtypes)} dtypes" + raise ValueError(msg) + del shape + del dtype + # End of shape and dtype parsing + + # Backend-specific branches + if is_dask_namespace(xp): + import dask + + metas: list[Array] = [arg._meta for arg in array_args] # pylint: disable=protected-access # pyright: ignore[reportAttributeAccessIssue] + meta_xp = array_namespace(*metas) + + wrapped = dask.delayed( # type: ignore[attr-defined] # pyright: ignore[reportPrivateImportUsage] + _lazy_apply_wrapper(func, as_numpy, multi_output, meta_xp), + pure=True, + ) + # This finalizes each arg, which is the same as arg.rechunk(-1). + # Please read docstring above for why we're not using + # dask.array.map_blocks or dask.array.blockwise! + delayed_out = wrapped(*args, **kwargs) + + out = tuple( + xp.from_delayed( + delayed_out[i], # pyright: ignore[reportIndexIssue] + # Dask's unknown shapes diverge from the Array API specification + shape=tuple(math.nan if s is None else s for s in shape), + dtype=dtype, + meta=metas[0], + ) + for i, (shape, dtype) in enumerate(zip(shapes, dtypes, strict=True)) + ) + + elif is_jax_namespace(xp) and _is_jax_jit_enabled(xp): + # Delay calling func with jax.pure_callback, which will forward to func eager + # JAX arrays. Do not use jax.pure_callback when running outside of the JIT, + # as it does not support raising exceptions: + # https://github.com/jax-ml/jax/issues/26102 + import jax + + if any(None in shape for shape in shapes): + msg = "Output shape must be fully known when running inside jax.jit" + raise ValueError(msg) + + # Shield kwargs from being coerced into JAX arrays. + # jax.pure_callback calls jax.jit under the hood, but without the chance of + # passing static_argnames / static_argnums. + wrapped = _lazy_apply_wrapper( + partial(func, **kwargs), as_numpy, multi_output, xp + ) + + # suppress unused-ignore to run mypy in -e lint as well as -e dev + out = cast( # type: ignore[bad-cast,unused-ignore] + tuple[Array, ...], + jax.pure_callback( + wrapped, + tuple( + jax.ShapeDtypeStruct(shape, dtype) # pyright: ignore[reportUnknownArgumentType] + for shape, dtype in zip(shapes, dtypes, strict=True) + ), + *args, + ), + ) + + else: + # Eager backends, including non-jitted JAX + wrapped = _lazy_apply_wrapper(func, as_numpy, multi_output, xp) + out = wrapped(*args, **kwargs) + + return out if multi_output else out[0] + + +def _is_jax_jit_enabled(xp: ModuleType) -> bool: # numpydoc ignore=PR01,RT01 + """Return True if this function is being called inside ``jax.jit``.""" + import jax # pylint: disable=import-outside-toplevel + + x = xp.asarray(False) + try: + return bool(x) + except jax.errors.TracerBoolConversionError: + return True + + +def _lazy_apply_wrapper( # type: ignore[explicit-any] # numpydoc ignore=PR01,RT01 + func: Callable[..., Array | ArrayLike | Sequence[Array | ArrayLike]], + as_numpy: bool, + multi_output: bool, + xp: ModuleType, +) -> Callable[..., tuple[Array, ...]]: + """ + Helper of `lazy_apply`. + + Given a function that accepts one or more arrays as positional arguments and returns + a single array-like or a sequence of array-likes, return a function that accepts the + same number of Array API arrays and always returns a tuple of Array API array. + + Any keyword arguments are passed through verbatim to the wrapped function. + """ + + # On Dask, @wraps causes the graph key to contain the wrapped function's name + @wraps(func) + def wrapper( # type: ignore[decorated-any,explicit-any] + *args: Array | complex | None, **kwargs: Any + ) -> tuple[Array, ...]: # numpydoc ignore=GL08 + args_list = [] + device = None + for arg in args: + if arg is not None and not is_python_scalar(arg): + if device is None: + device = _compat.device(arg) + if as_numpy: + import numpy as np + + arg = cast(Array, np.asarray(arg)) # type: ignore[bad-cast] # noqa: PLW2901 # pyright: ignore[reportInvalidCast] + args_list.append(arg) + assert device is not None + + out = func(*args_list, **kwargs) + + if multi_output: + assert isinstance(out, Sequence) + return tuple(xp.asarray(o, device=device) for o in out) + return (xp.asarray(out, device=device),) + + return wrapper diff --git a/src/array_api_extra/_lib/_utils/_typing.pyi b/src/array_api_extra/_lib/_utils/_typing.pyi index 9ef06162..e32a59bd 100644 --- a/src/array_api_extra/_lib/_utils/_typing.pyi +++ b/src/array_api_extra/_lib/_utils/_typing.pyi @@ -95,10 +95,10 @@ class DType(Protocol): # pylint: disable=missing-class-docstring class Device(Protocol): # pylint: disable=missing-class-docstring pass -SetIndex: TypeAlias = ( # type: ignore[no-any-explicit] +SetIndex: TypeAlias = ( # type: ignore[explicit-any] int | slice | EllipsisType | Array | tuple[int | slice | EllipsisType | Array, ...] ) -GetIndex: TypeAlias = ( # type: ignore[no-any-explicit] +GetIndex: TypeAlias = ( # type: ignore[explicit-any] SetIndex | None | tuple[int | slice | EllipsisType | None | Array, ...] ) diff --git a/src/array_api_extra/testing.py b/src/array_api_extra/testing.py index b3782090..4417b648 100644 --- a/src/array_api_extra/testing.py +++ b/src/array_api_extra/testing.py @@ -42,10 +42,10 @@ def override(func: Callable[P, T]) -> Callable[P, T]: T = TypeVar("T") -_ufuncs_tags: dict[object, dict[str, Any]] = {} # type: ignore[no-any-explicit] +_ufuncs_tags: dict[object, dict[str, Any]] = {} # type: ignore[explicit-any] -def lazy_xp_function( # type: ignore[no-any-explicit] +def lazy_xp_function( # type: ignore[explicit-any] func: Callable[..., Any], *, allow_dask_compute: int = 0, @@ -227,12 +227,12 @@ def xp(request, monkeypatch): mod = cast(ModuleType, request.module) mods = [mod, *cast(list[ModuleType], getattr(mod, "lazy_xp_modules", []))] - def iter_tagged() -> ( # type: ignore[no-any-explicit] + def iter_tagged() -> ( # type: ignore[explicit-any] Iterator[tuple[ModuleType, str, Callable[..., Any], dict[str, Any]]] ): for mod in mods: for name, func in mod.__dict__.items(): - tags: dict[str, Any] | None = None # type: ignore[no-any-explicit] + tags: dict[str, Any] | None = None # type: ignore[explicit-any] with contextlib.suppress(AttributeError): tags = func._lazy_xp_function # pylint: disable=protected-access if tags is None: @@ -253,7 +253,7 @@ def iter_tagged() -> ( # type: ignore[no-any-explicit] for mod, name, func, tags in iter_tagged(): if tags["jax_jit"]: # suppress unused-ignore to run mypy in -e lint as well as -e dev - wrapped = cast( # type: ignore[no-any-explicit] + wrapped = cast( # type: ignore[explicit-any] Callable[..., Any], jax.jit( func, @@ -289,7 +289,7 @@ def __init__(self, max_count: int, msg: str): # numpydoc ignore=GL08 self.msg = msg @override - def __call__(self, dsk: Graph, keys: Sequence[Key] | Key, **kwargs: Any) -> Any: # type: ignore[no-any-decorated,no-any-explicit] # numpydoc ignore=GL08 + def __call__(self, dsk: Graph, keys: Sequence[Key] | Key, **kwargs: Any) -> Any: # type: ignore[decorated-any,explicit-any] # numpydoc ignore=GL08 import dask self.count += 1 diff --git a/tests/test_at.py b/tests/test_at.py index 2a4a1947..07ea2d3b 100644 --- a/tests/test_at.py +++ b/tests/test_at.py @@ -56,7 +56,7 @@ def _at_op( """jitted helper of at_op""" if idx_pickle: idx = pickle.loads(idx_pickle) - meth = cast(Callable[..., Array], getattr(at(x, cast(SetIndex, idx)), op.value)) # type: ignore[no-any-explicit] + meth = cast(Callable[..., Array], getattr(at(x, cast(SetIndex, idx)), op.value)) # type: ignore[explicit-any] return meth(y, copy=copy, xp=xp) @@ -166,7 +166,7 @@ def test_copy_default(xp: ModuleType, library: Backend, op: _AtOp): """ x = xp.asarray([1.0, 10.0, 20.0]) expect_copy = not is_writeable_array(x) - meth = cast(Callable[..., Array], getattr(at(x)[:2], op.value)) # type: ignore[no-any-explicit] + meth = cast(Callable[..., Array], getattr(at(x)[:2], op.value)) # type: ignore[explicit-any] with assert_copy(x, None, expect_copy): _ = meth(2.0) @@ -175,7 +175,7 @@ def test_copy_default(xp: ModuleType, library: Backend, op: _AtOp): # even if the arrays are writeable. expect_copy = not is_writeable_array(x) or library is Backend.DASK idx = xp.asarray([True, True, False]) - meth = cast(Callable[..., Array], getattr(at(x, idx), op.value)) # type: ignore[no-any-explicit] + meth = cast(Callable[..., Array], getattr(at(x, idx), op.value)) # type: ignore[explicit-any] with assert_copy(x, None, expect_copy): _ = meth(2.0) diff --git a/tests/test_funcs.py b/tests/test_funcs.py index d269b2ca..23344f62 100644 --- a/tests/test_funcs.py +++ b/tests/test_funcs.py @@ -203,7 +203,7 @@ def test_device(self, xp: ModuleType, device: Device): p=st.floats(min_value=0, max_value=1), data=st.data(), ) - def test_hypothesis( # type: ignore[no-any-explicit,no-any-decorated] + def test_hypothesis( # type: ignore[explicit-any,decorated-any] self, n_arrays: int, rng_seed: int, diff --git a/tests/test_lazy.py b/tests/test_lazy.py new file mode 100644 index 00000000..fcee38b0 --- /dev/null +++ b/tests/test_lazy.py @@ -0,0 +1,429 @@ +from types import ModuleType +from typing import cast + +import numpy as np +import pytest + +import array_api_extra as xpx # Let some tests bypass lazy_xp_function +from array_api_extra import lazy_apply +from array_api_extra._lib import Backend +from array_api_extra._lib._testing import xp_assert_equal +from array_api_extra._lib._utils import _compat +from array_api_extra._lib._utils._compat import array_namespace, is_dask_array +from array_api_extra._lib._utils._helpers import eager_shape +from array_api_extra._lib._utils._typing import Array, Device +from array_api_extra.testing import lazy_xp_function + +lazy_xp_function( + lazy_apply, static_argnames=("func", "shape", "dtype", "as_numpy", "xp") +) + +as_numpy = pytest.mark.parametrize( + "as_numpy", + [ + False, + pytest.param( + True, + marks=[ + pytest.mark.skip_xp_backend(Backend.CUPY, reason="device->host copy"), + pytest.mark.skip_xp_backend(Backend.SPARSE, reason="densification"), + ], + ), + ], +) + + +@as_numpy +@pytest.mark.parametrize("shape", [(2,), (3, 2)]) +@pytest.mark.parametrize("dtype", ["int32", "float64"]) +def test_lazy_apply_simple( + xp: ModuleType, library: Backend, shape: tuple[int, ...], dtype: str, as_numpy: bool +): + def f(x: Array) -> Array: + xp2 = array_namespace(x) + if as_numpy or library in (Backend.NUMPY_READONLY, Backend.DASK): + assert isinstance(x, np.ndarray) + else: + assert xp2 is xp + + y = xp2.broadcast_to(xp2.astype(x + 1, getattr(xp2, dtype)), shape) + return xp2.asarray(y, copy=True) # Torch: ensure writeable numpy array + + x = xp.asarray([1, 2], dtype=xp.int16) + expect = xp.broadcast_to(xp.astype(x + 1, getattr(xp, dtype)), shape) + actual = lazy_apply(f, x, shape=shape, dtype=getattr(xp, dtype), as_numpy=as_numpy) + xp_assert_equal(actual, expect) + + +@as_numpy +def test_lazy_apply_broadcast(xp: ModuleType, as_numpy: bool): + """Test that default shape and dtype are broadcasted from the inputs.""" + + def f(x: Array, y: Array) -> Array: + return x + y + + x = xp.asarray([1, 2], dtype=xp.int16) + y = xp.asarray([[4], [5], [6]], dtype=xp.int32) + z = lazy_apply(f, x, y, as_numpy=as_numpy) + xp_assert_equal(z, x + y) + + +@as_numpy +def test_lazy_apply_multi_output(xp: ModuleType, as_numpy: bool): + def f(x: Array) -> tuple[Array, Array]: + xp2 = array_namespace(x) + y = x + xp2.asarray(2, dtype=xp2.int8) # Sparse: bad dtype propagation + z = xp2.broadcast_to(xp2.astype(x + 1, xp2.int16), (3, 2)) + z = xp2.asarray(z, copy=True) # Torch: ensure writeable numpy array + return y, z + + x = xp.asarray([1, 2], dtype=xp.int8) + expect = ( + xp.asarray([3, 4], dtype=xp.int8), + xp.asarray([[2, 3], [2, 3], [2, 3]], dtype=xp.int16), + ) + actual = lazy_apply( + f, x, shape=((2,), (3, 2)), dtype=(xp.int8, xp.int16), as_numpy=as_numpy + ) + assert isinstance(actual, tuple) + assert len(actual) == 2 + xp_assert_equal(actual[0], expect[0]) + xp_assert_equal(actual[1], expect[1]) + + +@pytest.mark.parametrize( + "as_numpy", + [ + pytest.param( + False, + marks=pytest.mark.xfail_xp_backend( + Backend.TORCH, reason="illegal dtype promotion" + ), + ), + pytest.param( + True, + marks=[ + pytest.mark.skip_xp_backend(Backend.CUPY, reason="device->host copy"), + pytest.mark.skip_xp_backend(Backend.SPARSE, reason="densification"), + ], + ), + ], +) +def test_lazy_apply_multi_output_broadcast_dtype(xp: ModuleType, as_numpy: bool): + """ + If dtype is omitted and there are multiple shapes, use the same + dtype for all output arrays, broadcasted from the inputs + """ + + def f(x: Array, y: Array) -> tuple[Array, Array]: + return x + y, x - y + + x = xp.asarray([1, 2], dtype=xp.float32) + y = xp.asarray(3, dtype=xp.float64) + expect = ( + xp.asarray([4, 5], dtype=xp.float64), + xp.asarray([-2, -1], dtype=xp.float64), + ) + actual = lazy_apply(f, x, y, shape=((2,), (2,)), as_numpy=as_numpy) + assert isinstance(actual, tuple) + assert len(actual) == 2 + xp_assert_equal(actual[0], expect[0]) + xp_assert_equal(actual[1], expect[1]) + + +def test_lazy_apply_core_indices(da: ModuleType): + """ + Test that a function that performs reductions along axes does so + globally and not locally to each Dask chunk. + """ + + def f(x: Array) -> Array: + xp = array_namespace(x) + return xp.sum(x, axis=0) + x + + x_np = cast(Array, np.arange(15).reshape(5, 3)) # type: ignore[bad-cast] # pyright: ignore[reportInvalidCast] + expect = da.asarray(f(x_np)) + x_da = da.asarray(x_np).rechunk(3) + + # A naive map_blocks fails because it applies f to each chunk separately, + # but f needs to reduce along axis 0 which is broken into multiple chunks. + # axis 0 is a "core axis" or "core index" (from xarray.apply_ufunc's + # "core dimension"). + with pytest.raises(AssertionError): + xp_assert_equal(da.map_blocks(f, x_da), expect) + + xp_assert_equal(lazy_apply(f, x_da), expect) + + +def test_lazy_apply_dont_run_on_meta(da: ModuleType): + """Test that Dask won't try running func on the meta array, + as it may have minimum size requirements. + """ + + def f(x: Array) -> Array: + assert x.size + return x + 1 + + x = da.arange(10) + assert not x._meta.size + y = lazy_apply(f, x) + xp_assert_equal(y, x + 1) + + +def test_lazy_apply_dask_non_numpy_meta(da: ModuleType): + """Test dask wrapping around a meta-namespace other than numpy.""" + # At the moment of writing, of all Array API namespaces cupy is + # the only one that Dask supports. + # For this reason, we can only test as_numpy=False since + # np.asarray(cp.Array) is blocked by the transfer guard. + + cp = pytest.importorskip("cupy") + cp = array_namespace(cp.empty(0)) + x_cp = cp.asarray([1, 2, 3]) + x_da = da.asarray([1, 2, 3]).map_blocks(cp.asarray) + assert array_namespace(x_da._meta) is cp + + def f(x: Array) -> Array: + return x + 1 + + y = lazy_apply(f, x_da) + assert array_namespace(y._meta) is cp # type: ignore[attr-defined] # pyright: ignore[reportUnknownArgumentType,reportAttributeAccessIssue] + xp_assert_equal(y.compute(), x_cp + 1) # type: ignore[attr-defined] # pyright: ignore[reportUnknownArgumentType,reportAttributeAccessIssue] + + +def test_lazy_apply_none_shape_in_args(xp: ModuleType, library: Backend): + x = xp.asarray([1, 1, 2, 2, 2]) + + # TODO mxp = meta_namespace(x, xp=xp) + mxp = np if library is Backend.DASK else xp + int_type = xp.asarray(0).dtype + + if library is Backend.JAX: + # Single output + with pytest.raises(ValueError, match="Output shape must be fully known"): + _ = lazy_apply(mxp.unique_values, x, shape=(None,)) + + # Multi output + with pytest.raises(ValueError, match="Output shape must be fully known"): + _ = lazy_apply( + mxp.unique_counts, + x, + shape=((None,), (None,)), + dtype=(x.dtype, int_type), + ) + else: + # Single output + values = lazy_apply(mxp.unique_values, x, shape=(None,)) + xp_assert_equal(values, xp.asarray([1, 2])) + + # Multi output + values, counts = lazy_apply( + mxp.unique_counts, + x, + shape=((None,), (None,)), + dtype=(x.dtype, int_type), + ) + xp_assert_equal(values, xp.asarray([1, 2])) + xp_assert_equal(counts, xp.asarray([2, 3])) + + +def check_lazy_apply_none_shape_broadcast(x: Array) -> Array: + def f(x: Array) -> Array: + return x + + x = x[x > 1] + # Use explicit namespace to bypass monkey-patching by lazy_xp_function + return xpx.lazy_apply(f, x) + + +lazy_xp_function(check_lazy_apply_none_shape_broadcast) + + +@pytest.mark.xfail_xp_backend(Backend.SPARSE, reason="bool mask") +@pytest.mark.xfail_xp_backend(Backend.JAX, reason="unknown shape") +def test_lazy_apply_none_shape_broadcast(xp: ModuleType): + """Broadcast from input array with unknown shape""" + x = xp.asarray([1, 2, 2]) + actual = check_lazy_apply_none_shape_broadcast(x) + xp_assert_equal(actual, xp.asarray([2, 2])) + + +@pytest.mark.parametrize( + "as_numpy", + [ + False, + pytest.param( + True, + marks=[ + pytest.mark.skip_xp_backend( + Backend.ARRAY_API_STRICT, reason="device->host copy" + ), + pytest.mark.skip_xp_backend(Backend.CUPY, reason="device->host copy"), + pytest.mark.skip_xp_backend(Backend.SPARSE, reason="densification"), + ], + ), + ], +) +def test_lazy_apply_device(xp: ModuleType, as_numpy: bool, device: Device): + def f(x: Array) -> Array: + xp2 = array_namespace(x) + # Deliberately forgetting to add device here to test that the + # output is transferred to the right device. This is necessary when + # as_numpy=True anyway. + return xp2.zeros(x.shape, dtype=x.dtype) + + x = xp.asarray([1, 2], device=device) + y = lazy_apply(f, x, as_numpy=as_numpy) + assert _compat.device(y) == device + + +def test_lazy_apply_arraylike(xp: ModuleType): + """Wrapped func returns an array-like""" + x = xp.asarray([1, 2, 3]) + + # Single output + def f(x: Array) -> int: + shape = eager_shape(x) + return shape[0] + + expect = xp.asarray(3) + actual = lazy_apply(f, x, shape=(), dtype=expect.dtype) + xp_assert_equal(actual, expect) + + # Multi output + def g(x: Array) -> tuple[int, list[int]]: + shape = eager_shape(x) + return shape[0], list(shape) + + actual2 = lazy_apply(g, x, shape=((), (1,)), dtype=(expect.dtype, expect.dtype)) + xp_assert_equal(actual2[0], xp.asarray(3)) + xp_assert_equal(actual2[1], xp.asarray([3])) + + +def test_lazy_apply_scalars_and_nones(xp: ModuleType, library: Backend): + def f(x: Array, y: None, z: int | Array) -> Array: + mxp = array_namespace(x, y, z) + mtyp = type(mxp.asarray(0)) + assert isinstance(x, mtyp) + assert y is None + # jax.pure_callback wraps scalar args + assert isinstance(z, mtyp if library is Backend.JAX else int) + return x + z + + x = xp.asarray([1, 2]) + w = lazy_apply(f, x, None, 3) + xp_assert_equal(w, x + 3) + + +def check_lazy_apply_kwargs(x: Array, expect_cls: type, as_numpy: bool) -> Array: + is_dask = is_dask_array(x) + recursive: list[object] = [] + if not is_dask: # dask.delayed crashes on recursion + recursive.append(recursive) + + def eager( + x: Array, + z: dict[int, list[int]], + msg: str, + msgs: list[str], + scalar: int, + recursive: list[list[object]], + ) -> Array: + assert isinstance(x, expect_cls) + # JAX will crash if x isn't material + assert int(x) == 0 + # Did we re-wrap the namedtuple correctly, or did it get + # accidentally changed to a basic tuple? + assert z == {0: [1, 2]} + assert msg == "Hello World" # must be hidden from JAX + assert msgs[0] == "Hello World" # must be hidden from JAX + assert isinstance(msg, str) + assert isinstance(msgs[0], str) + assert scalar == 1 # must be hidden from JAX + assert isinstance(scalar, int) + assert isinstance(recursive, list) + if not is_dask: + assert recursive[0][0] is recursive[0] + return x + 1 + + # Use explicit namespace to bypass monkey-patching by lazy_xp_function + return xpx.lazy_apply( # pyright: ignore[reportCallIssue] + eager, + x, + z={0: [1, 2]}, + msg="Hello World", + msgs=["Hello World"], + # This will be automatically cast to jax.Array if we don't wrap it + scalar=1, + recursive=recursive, + shape=x.shape, + dtype=x.dtype, + as_numpy=as_numpy, + ) + + +lazy_xp_function(check_lazy_apply_kwargs, static_argnames=("expect_cls", "as_numpy")) + + +@as_numpy +def test_lazy_apply_kwargs(xp: ModuleType, library: Backend, as_numpy: bool): + """When as_numpy=True, search and replace arrays in the (nested) keywords arguments + with numpy arrays, and leave the rest untouched.""" + x = xp.asarray(0) + expect_cls = np.ndarray if as_numpy or library is Backend.DASK else type(x) + actual = check_lazy_apply_kwargs(x, expect_cls, as_numpy) # pyright: ignore[reportUnknownArgumentType] + xp_assert_equal(actual, x + 1) + + +class CustomError(Exception): + pass + + +def raises(x: Array) -> Array: + def eager(_: Array) -> Array: + msg = "Hello World" + raise CustomError(msg) + + # Use explicit namespace to bypass monkey-patching by lazy_xp_function + return xpx.lazy_apply(eager, x, shape=x.shape, dtype=x.dtype) + + +# jax.pure_callback does not support raising +# https://github.com/jax-ml/jax/issues/26102 +lazy_xp_function(raises, jax_jit=False) + + +def test_lazy_apply_raises(xp: ModuleType): + """ + See Also + -------- + test_testing.py::test_lazy_xp_function_eagerly_raises + """ + x = xp.asarray(0) + + with pytest.raises(CustomError, match="Hello World"): + # Here we are disregarding the return value, which would + # normally cause the graph not to materialize and the + # exception not to be raised. + # However, lazy_xp_function will do it for us on function exit. + _ = raises(x) + + +def test_invalid_args(): + def f(x: Array) -> Array: + return x + + x = np.asarray(1) + + with pytest.raises(ValueError, match="at least one argument array"): + _ = lazy_apply(f, shape=(1,), dtype=np.int32, xp=np) + with pytest.raises(ValueError, match="at least one argument array"): + _ = lazy_apply(f, 1, shape=(1,), dtype=np.int32, xp=np) + with pytest.raises(ValueError, match="at least one argument array"): + _ = lazy_apply(f, shape=(1,), dtype=np.int32) + with pytest.raises(ValueError, match="multiple shapes but only one dtype"): + _ = lazy_apply(f, x, shape=[(1,), (2,)], dtype=np.int32) # type: ignore[call-overload] # pyright: ignore[reportCallIssue,reportArgumentType] + with pytest.raises(ValueError, match="single shape but multiple dtypes"): + _ = lazy_apply(f, x, shape=(1,), dtype=[np.int32, np.int64]) + with pytest.raises(ValueError, match="2 shapes and 1 dtypes"): + _ = lazy_apply(f, x, shape=[(1,), (2,)], dtype=[np.int32]) # type: ignore[arg-type] # pyright: ignore[reportCallIssue,reportArgumentType] diff --git a/tests/test_testing.py b/tests/test_testing.py index 1968eded..566e795f 100644 --- a/tests/test_testing.py +++ b/tests/test_testing.py @@ -15,7 +15,7 @@ from array_api_extra._lib._utils._typing import Array from array_api_extra.testing import lazy_xp_function -# mypy: disable-error-code=no-any-decorated +# mypy: disable-error-code=decorated-any # pyright: reportUnknownParameterType=false,reportMissingParameterType=false param_assert_equal_close = pytest.mark.parametrize( @@ -31,7 +31,7 @@ @param_assert_equal_close -def test_assert_close_equal_basic(xp: ModuleType, func: Callable[..., None]): # type: ignore[no-any-explicit] +def test_assert_close_equal_basic(xp: ModuleType, func: Callable[..., None]): # type: ignore[explicit-any] func(xp.asarray(0), xp.asarray(0)) func(xp.asarray([1, 2]), xp.asarray([1, 2])) @@ -51,7 +51,7 @@ def test_assert_close_equal_basic(xp: ModuleType, func: Callable[..., None]): # @pytest.mark.skip_xp_backend(Backend.NUMPY, reason="test other ns vs. numpy") @pytest.mark.skip_xp_backend(Backend.NUMPY_READONLY, reason="test other ns vs. numpy") @pytest.mark.parametrize("func", [xp_assert_equal, xp_assert_close]) -def test_assert_close_equal_namespace(xp: ModuleType, func: Callable[..., None]): # type: ignore[no-any-explicit] +def test_assert_close_equal_namespace(xp: ModuleType, func: Callable[..., None]): # type: ignore[explicit-any] with pytest.raises(AssertionError, match="namespaces do not match"): func(xp.asarray(0), np.asarray(0)) with pytest.raises(TypeError, match="Unrecognized array input"): @@ -73,7 +73,7 @@ def test_assert_close_tolerance(xp: ModuleType): @param_assert_equal_close @pytest.mark.xfail_xp_backend(Backend.SPARSE, reason="index by sparse array") -def test_assert_close_equal_none_shape(xp: ModuleType, func: Callable[..., None]): # type: ignore[no-any-explicit] +def test_assert_close_equal_none_shape(xp: ModuleType, func: Callable[..., None]): # type: ignore[explicit-any] """On dask and other lazy backends, test that a shape with NaN's or None's can be compared to a real shape. """ @@ -196,7 +196,7 @@ def static_params3(x: Array, n: int, flag: bool = False) -> Array: @pytest.mark.parametrize("func", [static_params1, static_params2, static_params3]) -def test_lazy_xp_function_static_params(xp: ModuleType, func: Callable[..., Array]): # type: ignore[no-any-explicit] +def test_lazy_xp_function_static_params(xp: ModuleType, func: Callable[..., Array]): # type: ignore[explicit-any] x = xp.asarray([1.0, 2.0]) xp_assert_equal(func(x, 1), xp.asarray([3.0, 6.0])) xp_assert_equal(func(x, 1, True), xp.asarray([2.0, 4.0]))