Merge branch 'main' into init-zarr

* main: (58 commits)
  Adapt map_blocks to use new Coordinates API (pydata#8560)
  add xeofs to ecosystem.rst (pydata#8561)
  Offer a fixture for unifying DataArray & Dataset tests (pydata#8533)
  Generalize cumulative reduction (scan) to non-dask types (pydata#8019)
  Filter null values before plotting (pydata#8535)
  Update concat.py (pydata#8538)
  Add getitem to array protocol (pydata#8406)
  Added option to specify weights in xr.corr() and xr.cov() (pydata#8527)
  Filter out doctest warning (pydata#8539)
  Bump actions/setup-python from 4 to 5 (pydata#8540)
  Point users to where in their code they should make mods for Dataset.dims (pydata#8534)
  Add Cumulative aggregation (pydata#8512)
  dev whats-new
  Whats-new for 2023.12.0 (pydata#8532)
  explicitly skip using `__array_namespace__` for `numpy.ndarray` (pydata#8526)
  Add `eval` method to Dataset (pydata#7163)
  Deprecate ds.dims returning dict (pydata#8500)
  test and fix empty xindexes repr (pydata#8521)
  Remove PR labeler bot (pydata#8525)
  Hypothesis strategy for generating Variable objects (pydata#8404)
  ...

Author: dcherian

.github/labeler.yml

@@ -7,7 +7,7 @@ on:
 
 jobs:
   benchmark:
-    if: ${{ contains( github.event.pull_request.labels.*.name, 'run-benchmark') && github.event_name == 'pull_request' || contains( github.event.pull_request.labels.*.name, 'topic-performance') && github.event_name == 'pull_request' || github.event_name == 'workflow_dispatch' }}
+    if: ${{ contains( github.event.pull_request.labels.*.name, 'run-benchmark') && github.event_name == 'pull_request' || github.event_name == 'workflow_dispatch' }}
     name: Linux
     runs-on: ubuntu-20.04
     env:

.github/workflows/benchmarks.yml

@@ -41,7 +41,7 @@ jobs:
 
     env:
       CONDA_ENV_FILE: ci/requirements/environment.yml
-      PYTHON_VERSION: "3.10"
+      PYTHON_VERSION: "3.11"
 
     steps:
       - uses: actions/checkout@v4
@@ -76,7 +76,11 @@ jobs:
           # Raise an error if there are warnings in the doctests, with `-Werror`.
           # This is a trial; if it presents an problem, feel free to remove.
           # See https://github.com/pydata/xarray/issues/7164 for more info.
-          python -m pytest --doctest-modules xarray --ignore xarray/tests -Werror
+
+          # ignores:
+          # 1. h5py: see https://github.com/pydata/xarray/issues/8537
+          python -m pytest --doctest-modules xarray --ignore xarray/tests -Werror \
+              -W "ignore:h5py is running against HDF5 1.14.3:UserWarning"
 
   mypy:
     name: Mypy
@@ -87,7 +91,7 @@ jobs:
         shell: bash -l {0}
     env:
       CONDA_ENV_FILE: ci/requirements/environment.yml
-      PYTHON_VERSION: "3.10"
+      PYTHON_VERSION: "3.11"
 
     steps:
       - uses: actions/checkout@v4
@@ -117,7 +121,7 @@ jobs:
           python xarray/util/print_versions.py
       - name: Install mypy
         run: |
-          python -m pip install "mypy<1.7" --force-reinstall
+          python -m pip install "mypy<1.8" --force-reinstall
 
       - name: Run mypy
         run: |
@@ -171,7 +175,7 @@ jobs:
           python xarray/util/print_versions.py
       - name: Install mypy
         run: |
-          python -m pip install "mypy<1.7" --force-reinstall
+          python -m pip install "mypy<1.8" --force-reinstall
 
       - name: Run mypy
         run: |
@@ -332,7 +336,7 @@ jobs:
         with:
           environment-name: xarray-tests
           create-args: >-
-            python=3.10
+            python=3.11
             pyyaml
             conda
             python-dateutil

.github/workflows/ci-additional.yaml

@@ -11,7 +11,7 @@ jobs:
       - uses: actions/checkout@v4
         with:
           fetch-depth: 0
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: "3.11"
 

.github/workflows/label-all.yml

@@ -15,7 +15,7 @@ jobs:
       - uses: actions/checkout@v4
         with:
           fetch-depth: 0
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         name: Install Python
         with:
           python-version: "3.11"
@@ -50,7 +50,7 @@ jobs:
     needs: build-artifacts
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         name: Install Python
         with:
           python-version: "3.11"
@@ -88,7 +88,7 @@ jobs:
           path: dist
       - name: Publish package to TestPyPI
         if: github.event_name == 'push'
-        uses: pypa/[email protected].10
+        uses: pypa/[email protected].11
         with:
           repository_url: https://test.pypi.org/legacy/
           verbose: true
@@ -111,6 +111,6 @@ jobs:
           name: releases
           path: dist
       - name: Publish package to PyPI
-        uses: pypa/[email protected].10
+        uses: pypa/[email protected].11
         with:
           verbose: true

.github/workflows/label-prs.yml

@@ -50,7 +50,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10"]
+        python-version: ["3.11"]
     steps:
       - uses: actions/checkout@v4
         with:
@@ -110,17 +110,17 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10"]
+        python-version: ["3.11"]
     steps:
       - uses: actions/checkout@v4
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
       - name: Set up conda environment
-        uses: mamba-org/provision-with-micromamba@v15
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: ci/requirements/environment.yml
           environment-name: xarray-tests
-          extra-specs: |
+          create-args: >-
             python=${{ matrix.python-version }}
             pytest-reportlog
             conda

.github/workflows/nightly-wheels.yml

@@ -18,24 +18,24 @@ repos:
         files: ^xarray/
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: 'v0.1.4'
+    rev: 'v0.1.6'
     hooks:
       - id: ruff
         args: ["--fix"]
   # https://github.com/python/black#version-control-integration
   - repo: https://github.com/psf/black
-    rev: 23.10.1
+    rev: 23.11.0
     hooks:
       - id: black-jupyter
   - repo: https://github.com/keewis/blackdoc
     rev: v0.3.9
     hooks:
       - id: blackdoc
         exclude: "generate_aggregations.py"
-        additional_dependencies: ["black==23.10.1"]
+        additional_dependencies: ["black==23.11.0"]
       - id: blackdoc-autoupdate-black
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.6.1
+    rev: v1.7.1
     hooks:
       - id: mypy
         # Copied from setup.cfg

.github/workflows/pypi-release.yaml

@@ -9,6 +9,7 @@ dependencies:
   - cartopy
   - cfgrib
   - dask-core>=2022.1
+  - hypothesis>=6.75.8
   - h5netcdf>=0.13
   - ipykernel
   - ipywidgets  # silence nbsphinx warning

.github/workflows/upstream-dev-ci.yaml

@@ -16,11 +16,11 @@ dependencies:
   - dask-core=2022.7
   - distributed=2022.7
   - flox=0.5
-  - h5netcdf=1.0
+  - h5netcdf=1.1
   # h5py and hdf5 tend to cause conflicts
   # for e.g. hdf5 1.12 conflicts with h5py=3.1
   # prioritize bumping other packages instead
-  - h5py=3.6
+  - h5py=3.7
   - hdf5=1.12
   - hypothesis
   - iris=3.2