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Fix a bug.
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ReacNetGenerator/__init__.py

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@@ -3,8 +3,8 @@
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###################################
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## Reaction Network Generator(ReacNetGenerator)
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## An automatic generator of reaction network for reactive molecular dynamics simulation.
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## version 1.2.1
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## updated at 2018/7/5 20:00
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## version 1.2.2
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## updated at 2018/7/5 22:00
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## Author: Jinzhe Zeng
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######### Features #########
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######## class ########
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class ReacNetGenerator(object):
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def __init__(self,inputfiletype="lammpsbondfile",inputfilename="bonds.reaxc",atomname=["C","H","O"],originfilename=None,hmmfilename=None,atomfilename=None,moleculefilename=None,atomroutefilename=None,reactionfilename=None,tablefilename=None,moleculetempfilename=None,moleculetemp2filename=None,moleculestructurefilename=None,imagefilename=None,stepinterval=1,p=[0.5,0.5],a=[[0.999,0.001],[0.001,0.999]],b=[[0.6, 0.4],[0.4, 0.6]],runHMM=True,SMILES=True,getoriginfile=False,species={},node_size=200,font_size=6,widthcoefficient=1,show=False,maxspecies=20,n_color=256,drawmolecule=False,nolabel=False,filter=[],node_color=[78/256,196/256,238/256],pos={},printfiltersignal=False,showid=True,k=None,start_color=[1,1,1],end_color=[0,0,0]):
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self.version="1.2.1"
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self.version="1.2.2"
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print("======= ReacNetGenerator "+self.version+" ======")
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print("Author: Jinzhe Zeng")
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@@ -233,7 +233,7 @@ def step3(self):
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if self.SMILES:
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self.printmoleculeSMILESname()
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else:
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self.mname=printmoleculename()
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self.printmoleculename()
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atomeach=self.getatomeach()
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allmoleculeroute=self.printatomroute(atomeach)
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return allmoleculeroute

setup.py

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from setuptools import setup
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setup(name='ReacNetGenerator',
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version='1.2.1',
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version='1.2.2',
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description='Reaction Network Generator',
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keywords="reaction network",
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url='https://github.com/njzjz/ReacNetGenerator',

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