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location of trained scANVI model #5

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nicetheworld opened this issue Dec 22, 2024 · 0 comments
Open

location of trained scANVI model #5

nicetheworld opened this issue Dec 22, 2024 · 0 comments

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@nicetheworld
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Hi

Very very nice job, it's very helpful for researchers in this field

When I try to map brain organoid data to the developing human brain ([Braun at al.],I only get the ref_adata from this paper,but for 'scarches_BraunLinnarsson/model.pt' in your Tutorials, I can't get it location of this pretraining model, Have you already provided it? Or we need to train it ourselves?

A snippet of my code
# Load reference model ref_model = scvi.model.SCANVI.load( "scarches_BraunLinnarsson/model.pt", adata=ref_adata, )
Thanks!

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