From f204ebdc10f8c1e7a50bb16f0281d4a55948828d Mon Sep 17 00:00:00 2001
From: Sangjoon Bob Lee <bobleesj@gmail.com>
Date: Wed, 6 Nov 2024 19:13:34 -0500
Subject: [PATCH 1/2] use latest .codecov.yml, remove coveragerc, add codecov
 secret to test on pr workflow

---
 .codecov.yml                      | 42 ++++++++-----------------------
 .coveragerc                       | 13 ----------
 .github/workflows/tests-on-pr.yml |  2 ++
 3 files changed, 13 insertions(+), 44 deletions(-)
 delete mode 100644 .coveragerc

diff --git a/.codecov.yml b/.codecov.yml
index 04dd6510..7e61a29f 100644
--- a/.codecov.yml
+++ b/.codecov.yml
@@ -1,34 +1,14 @@
-# codecov can find this file anywhere in the repo, so we don't need to clutter
-# the root folder.
-#comment: false
-
-codecov:
-  notify:
-    require_ci_to_pass: no
-
 coverage:
   status:
-    patch:
+    project:  # more options at https://docs.codecov.com/docs/commit-status
       default:
-        target: '70'
-        if_no_uploads: error
-        if_not_found: success
-        if_ci_failed: failure
-    project:
-      default: false
-      library:
-        target: auto
-        if_no_uploads: error
-        if_not_found: success
-        if_ci_failed: error
-        paths: '!*/tests/.*'
-
-      tests:
-        target: 97.9%
-        paths: '*/tests/.*'
-        if_not_found: success
-
-flags:
-  tests:
-    paths:
-      - tests/
+        target: auto # use the coverage from the base commit, fail if coverage is lower
+        threshold: 0%  # allow the coverage to drop by
+
+comment:
+  layout: " diff, flags, files"
+  behavior: default
+  require_changes: false
+  require_base: false  # [true :: must have a base report to post]
+  require_head: false  # [true :: must have a head report to post]
+  hide_project_coverage: false # [true :: only show coverage on the git diff aka patch coverage]
\ No newline at end of file
diff --git a/.coveragerc b/.coveragerc
deleted file mode 100644
index 0ed6eac5..00000000
--- a/.coveragerc
+++ /dev/null
@@ -1,13 +0,0 @@
-[run]
-source =
-    diffpy.utils
-[report]
-omit =
-    */python?.?/*
-    */site-packages/nose/*
-    # ignore _version.py and versioneer.py
-    .*version.*
-    *_version.py
-
-exclude_lines =
-    if __name__ == '__main__':
diff --git a/.github/workflows/tests-on-pr.yml b/.github/workflows/tests-on-pr.yml
index dd0a102e..baac1aeb 100644
--- a/.github/workflows/tests-on-pr.yml
+++ b/.github/workflows/tests-on-pr.yml
@@ -14,3 +14,5 @@ jobs:
       project: diffpy.utils
       c_extension: false
       headless: false
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

From aa2ce946de4e543cab7f0497f88fffb7d40586c4 Mon Sep 17 00:00:00 2001
From: Sangjoon Bob Lee <bobleesj@gmail.com>
Date: Wed, 6 Nov 2024 19:14:18 -0500
Subject: [PATCH 2/2] Apply precommit

---
 .codecov.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.codecov.yml b/.codecov.yml
index 7e61a29f..5a94096e 100644
--- a/.codecov.yml
+++ b/.codecov.yml
@@ -11,4 +11,4 @@ comment:
   require_changes: false
   require_base: false  # [true :: must have a base report to post]
   require_head: false  # [true :: must have a head report to post]
-  hide_project_coverage: false # [true :: only show coverage on the git diff aka patch coverage]
\ No newline at end of file
+  hide_project_coverage: false # [true :: only show coverage on the git diff aka patch coverage]