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hcho3hcho3
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Various fixes
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‎.github/dependabot.yml‎

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# To get started with Dependabot version updates, you'll need to specify which
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# package ecosystems to update and where the package manifests are located.
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# Please see the documentation for all configuration options:
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# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
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version: 2
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updates:
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- package-ecosystem: "maven"
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directory: "/jvm-packages"
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schedule:
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interval: "monthly"
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- package-ecosystem: "maven"
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directory: "/jvm-packages/xgboost4j"
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schedule:
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interval: "monthly"
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- package-ecosystem: "maven"
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directory: "/jvm-packages/xgboost4j-gpu"
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schedule:
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interval: "monthly"
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- package-ecosystem: "maven"
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directory: "/jvm-packages/xgboost4j-example"
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schedule:
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interval: "monthly"
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- package-ecosystem: "maven"
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directory: "/jvm-packages/xgboost4j-spark"
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schedule:
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interval: "monthly"
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- package-ecosystem: "maven"
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directory: "/jvm-packages/xgboost4j-spark-gpu"
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schedule:
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interval: "monthly"
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- package-ecosystem: "github-actions"
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directory: /
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schedule:
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interval: "monthly"

‎.github/lock.yml‎

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# Configuration for lock-threads - https://github.com/dessant/lock-threads
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# Number of days of inactivity before a closed issue or pull request is locked
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daysUntilLock: 90
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# Issues and pull requests with these labels will not be locked. Set to `[]` to disable
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exemptLabels:
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- feature-request
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# Label to add before locking, such as `outdated`. Set to `false` to disable
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lockLabel: false
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# Comment to post before locking. Set to `false` to disable
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lockComment: false
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# Assign `resolved` as the reason for locking. Set to `false` to disable
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setLockReason: true
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# Limit to only `issues` or `pulls`
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# only: issues
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# Optionally, specify configuration settings just for `issues` or `pulls`
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# issues:
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# exemptLabels:
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# - help-wanted
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# lockLabel: outdated
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# pulls:
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# daysUntilLock: 30
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# Repository to extend settings from
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# _extends: repo

‎.github/workflows/freebsd.yml‎

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name: FreeBSD
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on: [push, pull_request]
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permissions:
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contents: read # to fetch code (actions/checkout)
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concurrency:
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group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
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cancel-in-progress: true
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jobs:
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test:
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runs-on: ubuntu-latest
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timeout-minutes: 20
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name: A job to run test in FreeBSD
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steps:
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- uses: actions/checkout@v4
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with:
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submodules: 'true'
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- name: Test in FreeBSD
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id: test
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uses: vmactions/freebsd-vm@v1
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with:
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usesh: true
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prepare: |
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pkg install -y cmake git ninja googletest
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run: |
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mkdir build
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cd build
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cmake .. -GNinja -DGOOGLE_TEST=ON
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ninja -v
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./testxgboost

‎.github/workflows/r_nold.yml‎

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# Run expensive R tests with the help of rhub. Only triggered by a pull request review
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# See discussion at https://github.com/dmlc/xgboost/pull/6378
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name: XGBoost-R-noLD
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on:
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pull_request_review_comment:
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types: [created]
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permissions:
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contents: read # to fetch code (actions/checkout)
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concurrency:
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group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
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cancel-in-progress: true
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jobs:
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test-R-noLD:
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if: github.event.comment.body == '/gha run r-nold-test' && contains('OWNER,MEMBER,COLLABORATOR', github.event.comment.author_association)
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timeout-minutes: 120
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runs-on: ubuntu-latest
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container:
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image: rhub/debian-gcc-devel-nold
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steps:
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- name: Install git and system packages
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shell: bash
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run: |
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apt update && apt install libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev libglpk-dev libxml2-dev libharfbuzz-dev libfribidi-dev git -y
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- uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29 # v4.1.6
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with:
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submodules: 'true'
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- name: Install dependencies
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shell: bash -l {0}
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run: |
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/tmp/R-devel/bin/Rscript -e "source('./R-package/tests/helper_scripts/install_deps.R')"
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- name: Run R tests
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shell: bash
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run: |
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cd R-package && \
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/tmp/R-devel/bin/R CMD INSTALL . && \
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/tmp/R-devel/bin/R -q -e "library(testthat); setwd('tests'); source('testthat.R')"

‎.github/workflows/sycl_tests.yml‎

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permissions:
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contents: read # to fetch code (actions/checkout)
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defaults:
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run:
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shell: bash -l {0}
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concurrency:
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group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
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cancel-in-progress: true
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conda info
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conda list
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- name: Build and install XGBoost
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shell: bash -l {0}
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run: |
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mkdir build
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cd build
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cmake .. -DGOOGLE_TEST=ON -DUSE_DMLC_GTEST=ON -DPLUGIN_SYCL=ON -DCMAKE_CXX_COMPILER=g++ -DCMAKE_C_COMPILER=gcc -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX
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make -j$(nproc)
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- name: Run gtest binary for SYCL
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run: |
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cd build
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./testxgboost --gtest_filter=Sycl*
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- name: Run gtest binary for non SYCL
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cmake .. -DGOOGLE_TEST=ON -DUSE_DMLC_GTEST=ON -DPLUGIN_SYCL=ON -DCMAKE_CXX_COMPILER=g++ \
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-DCMAKE_C_COMPILER=gcc -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX -GNinja
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ninja
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- name: Run gtest
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run: |
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cd build
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./testxgboost --gtest_filter=-Sycl*
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./testxgboost
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python-sycl-tests-on-ubuntu:
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name: Test XGBoost Python package with SYCL on ${{ matrix.os }}
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run: |
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mkdir build
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cd build
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cmake .. -DPLUGIN_SYCL=ON -DCMAKE_CXX_COMPILER=g++ -DCMAKE_C_COMPILER=gcc -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
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make -j$(nproc)
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cmake .. -DPLUGIN_SYCL=ON -DCMAKE_CXX_COMPILER=g++ -DCMAKE_C_COMPILER=gcc \
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-DCMAKE_PREFIX_PATH=$CONDA_PREFIX -GNinja
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ninja
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- name: Install Python package
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run: |
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cd python-package

‎ops/conda_env/linux_sycl_test.yml‎

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- pytest-timeout
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- pytest-cov
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- dask
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- ninja
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- dpcpp_linux-64
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- onedpl-devel
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- intel-openmp

‎ops/docker/dockerfile/Dockerfile.gpu_build_rockylinux8‎

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# Default entry-point to use if running locally
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# It will preserve attributes of created files
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COPY entrypoint.sh /scripts/
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COPY docker/entrypoint.sh /scripts/
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WORKDIR /workspace
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ENTRYPOINT ["/scripts/entrypoint.sh"]

‎ops/pipeline/build-jvm-doc-impl.sh‎

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# Package JVM docs in a tarball
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mkdir -p tmp/scaladocs
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cp -rv xgboost4j/target/site/apidocs/ ./tmp/javadocs/
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cp -rv xgboost4j/target/reports/apidocs/ ./tmp/javadocs/
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cp -rv xgboost4j/target/site/scaladocs/ ./tmp/scaladocs/xgboost4j/
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cp -rv xgboost4j-spark/target/site/scaladocs/ ./tmp/scaladocs/xgboost4j-spark/
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cp -rv xgboost4j-spark-gpu/target/site/scaladocs/ ./tmp/scaladocs/xgboost4j-spark-gpu/

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