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mlange05mlange05
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ECLand: Add manual netcdf build for Intel
1 parent 0c6d1e0 commit f71c4f0

4 files changed

Lines changed: 194 additions & 2 deletions

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‎.github/tools/install-hdf5.sh‎

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#!/usr/bin/env bash
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version=1.14.4-3
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TEMPORARY_FILES="${TMPDIR:-/tmp}"
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export HDF5_INSTALL_DIR=$(pwd)/hdf5-install
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while [ $# != 0 ]; do
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case "$1" in
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"--prefix")
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export HDF5_INSTALL_DIR="$2"; shift
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;;
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"--tmpdir")
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TEMPORARY_FILES="$2"; shift
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;;
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"--version")
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version="$2"; shift
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;;
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*)
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echo "Unrecognized argument '$1'"
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exit 1
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;;
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esac
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shift
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done
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HDF5_MIRROR=https://support.hdfgroup.org/ftp/HDF5/releases
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HDF5_VERSION=${version}
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# Pick out version parts separated by '.'
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VERSION_PARTS=($(echo ${HDF5_VERSION} | tr "." "\n"))
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# Major version, e.g., 1.14
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MAJOR_VERSION=${VERSION_PARTS[0]}.${VERSION_PARTS[1]}
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# Minor version parts, including patch level (if any), e.g., 3 or 4-3
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MINOR_VERSION_PARTS=($(echo ${VERSION_PARTS[2]} | tr "-" "\n"))
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# Minor version without patch level
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MINOR_VERSION=${MINOR_VERSION_PARTS[0]}
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URL=${HDF5_MIRROR}/hdf5-${MAJOR_VERSION}/hdf5-${MAJOR_VERSION}.${MINOR_VERSION}/src/hdf5-${HDF5_VERSION}.tar.gz
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FOLDER=hdf5-${HDF5_VERSION}
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if [ ! -d "${TEMPORARY_FILES}/${FOLDER}" ]; then
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echo "Downloading ${TEMPORARY_FILES}/${FOLDER} from URL [${URL}]"
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mkdir -p ${TEMPORARY_FILES}
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curl --location \
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"${URL}" | tar zx -C "${TEMPORARY_FILES}"
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else
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echo "Download already present in ${TEMPORARY_FILES}/${FOLDER}"
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fi
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mkdir -p ${TEMPORARY_FILES}/build-${FOLDER} && cd ${TEMPORARY_FILES}/build-${FOLDER}
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rm -rf ./*
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cmake -G Ninja ${TEMPORARY_FILES}/${FOLDER} -DHDF5_BUILD_FORTRAN=ON -DHDF5_BUILD_HL_LIB=ON -DBUILD_TESTING=OFF
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cmake --build . --config Release
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cmake --install . --prefix "${HDF5_INSTALL_DIR}"

‎.github/tools/install-netcdf-c.sh‎

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#!/usr/bin/env bash
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version=4.9.2
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TEMPORARY_FILES="${TMPDIR:-/tmp}"
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export NETCDF_INSTALL_DIR=$(pwd)/netcdf-install
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while [ $# != 0 ]; do
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case "$1" in
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"--prefix")
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export NETCDF_INSTALL_DIR="$2"; shift
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;;
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"--tmpdir")
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TEMPORARY_FILES="$2"; shift
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;;
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"--version")
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version="$2"; shift
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;;
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"--hdf5-root")
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export HDF5_ROOT="$2"; shift
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;;
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*)
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echo "Unrecognized argument '$1'"
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exit 1
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;;
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esac
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shift
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done
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NETCDF_MIRROR=https://downloads.unidata.ucar.edu/netcdf-c/
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NETCDF_VERSION=${version}
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URL=${NETCDF_MIRROR}/${NETCDF_VERSION}/netcdf-c-${NETCDF_VERSION}.tar.gz
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FOLDER=netcdf-c-${NETCDF_VERSION}
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if [ ! -d "${TEMPORARY_FILES}/${FOLDER}" ]; then
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echo "Downloading ${TEMPORARY_FILES}/${FOLDER} from URL [${URL}]"
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mkdir -p ${TEMPORARY_FILES}
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curl --location \
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"${URL}" | tar zx -C "${TEMPORARY_FILES}"
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else
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echo "Download already present in ${TEMPORARY_FILES}/${FOLDER}"
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fi
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mkdir -p ${TEMPORARY_FILES}/build-${FOLDER} && cd ${TEMPORARY_FILES}/build-${FOLDER}
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rm -rf ./*
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cmake -G Ninja ${TEMPORARY_FILES}/${FOLDER} \
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-DHDF5_DIR=${HDF5_ROOT}/cmake -DCMAKE_INSTALL_PREFIX="${NETCDF_INSTALL_DIR}" \
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-DENABLE_TESTS=OFF
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cmake --build . --config Release
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cmake --install .

‎.github/tools/install-netcdf-fortran.sh‎

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#!/usr/bin/env bash
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version=4.6.1
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TEMPORARY_FILES="${TMPDIR:-/tmp}"
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export NETCDF_INSTALL_DIR=$(pwd)/netcdf-install
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while [ $# != 0 ]; do
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case "$1" in
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"--prefix")
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export NETCDF_INSTALL_DIR="$2"; shift
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;;
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"--tmpdir")
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TEMPORARY_FILES="$2"; shift
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;;
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"--version")
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version="$2"; shift
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;;
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"--netcdf-root")
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export NETCDF_ROOT="$2"; shift
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;;
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*)
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echo "Unrecognized argument '$1'"
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exit 1
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;;
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esac
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shift
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done
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NETCDF_MIRROR=https://downloads.unidata.ucar.edu/netcdf-fortran/
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NETCDF_VERSION=${version}
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URL=${NETCDF_MIRROR}/${NETCDF_VERSION}/netcdf-fortran-${NETCDF_VERSION}.tar.gz
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FOLDER=/netcdf-fortran-${NETCDF_VERSION}
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if [ ! -d "${TEMPORARY_FILES}/${FOLDER}" ]; then
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echo "Downloading ${TEMPORARY_FILES}/${FOLDER} from URL [${URL}]"
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mkdir -p ${TEMPORARY_FILES}
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curl --location \
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"${URL}" | tar zx -C "${TEMPORARY_FILES}"
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else
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echo "Download already present in ${TEMPORARY_FILES}/${FOLDER}"
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fi
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mkdir -p ${TEMPORARY_FILES}/build-${FOLDER} && cd ${TEMPORARY_FILES}/build-${FOLDER}
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rm -rf ./*
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NETCDF_LIB_DIR="$(${NETCDF_ROOT}/bin/nc-config --libdir)"
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cmake -G Ninja ${TEMPORARY_FILES}/${FOLDER} \
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-DnetCDF_LIBRARIES="${NETCDF_LIB_DIR}/libnetcdf.so" -DnetCDF_INCLUDE_DIR="${NETCDF_ROOT}/include" \
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-DENABLE_TESTS=OFF -DCMAKE_INSTALL_PREFIX="${NETCDF_INSTALL_DIR}"
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cmake --build . --config Release
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cmake --install .

‎.github/workflows/build.yml‎

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echo "SDKROOT=$(xcrun --show-sdk-path)" >> $GITHUB_ENV
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brew install ninja
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brew install libomp
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brew install netcdf-fortran
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brew install libaec
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brew install coreutils
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brew install netcdf-fortran
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else
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sudo apt-get update
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sudo apt-get install ninja-build
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sudo apt-get install libaec-dev
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sudo apt-get install ninja-build libcurl4-openssl-dev
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fi
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if [[ "${{ matrix.compiler }}" =~ gnu ]]; then
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sudo apt-get install libnetcdff-dev
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fi
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# Add mpirun to path for testing
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[ -z ${MPI_HOME+x} ] || echo "${MPI_HOME}/bin" >> $GITHUB_PATH
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- name: Install HDF5
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if: contains( matrix.compiler, 'intel' )
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run: |
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if [[ -f ${{ env.DEPS_DIR }}/hdf5/lib/libhdf5.settings ]]; then
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echo "::debug::HDF5 restored from cache"
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else
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${ECLAND_TOOLS}/install-hdf5.sh --prefix ${{ env.DEPS_DIR }}/hdf5
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fi
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echo "HDF5_ROOT=${{ env.DEPS_DIR }}/hdf5" >> $GITHUB_ENV
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- name: Install NetCDF C
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if: contains( matrix.compiler, 'intel' )
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run: |
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if [[ -f ${{ env.DEPS_DIR }}/netcdf/bin/nc-config ]]; then
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echo "::debug::NetCDF C restored from cache"
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else
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${ECLAND_TOOLS}/install-netcdf-c.sh --prefix ${{ env.DEPS_DIR }}/netcdf --hdf5-root ${HDF5_ROOT}
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fi
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echo "NETCDF_ROOT=${{ env.DEPS_DIR }}/netcdf" >> $GITHUB_ENV
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- name: Install NetCDF Fortran
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if: contains( matrix.compiler, 'intel' )
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run: |
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if [[ -f ${NETCDF_ROOT}/bin/nf-config ]]; then
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echo "::debug::NetCDF Fortran restored from cache"
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else
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${ECLAND_TOOLS}/install-netcdf-fortran.sh --prefix ${{ env.DEPS_DIR }}/netcdf --netcdf-root ${NETCDF_ROOT}
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fi
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- name: Build & Test
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id: build-test
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uses: ecmwf-actions/build-package@v2

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