Pollux 1.01: Added compability with older versions of the GCC compiler.

Author: emarinier

README

@@ -24,10 +24,10 @@ produced by second-generation sequencing technologies.
 
 -- Release --
 
-Pollux 1.00
-4 November 2014
+Pollux 1.01
+11 February 2015
 
-This is the initial release of Pollux.
+Added compability with older versions of the GCC compiler.
 
 -- Requirements --
 
@@ -50,6 +50,12 @@ Simple correction:
 Brendan McConkey: [email protected]
 Eric Marinier: [email protected]
 
+-- Publication --
+
+Marinier, Eric, Daniel G. Brown, and Brendan J. McConkey. 
+"Pollux: platform independent error correction of single and mixed genomes."
+BMC Bioinformatics 16.1 (2015): 10.
+
 -- Credits --
 
 The Makefile is derived from [email protected] (2010-11-05).

ReleaseNotes

@@ -0,0 +1,15 @@
+======================================================================
+
+Pollux 1.01
+11 February 2015
+
+Added compability with older versions of the GCC compiler.
+
+======================================================================
+
+Pollux 1.00
+4 November 2014
+
+This is the initial release of Pollux.
+
+======================================================================

source/Correction.h

@@ -18,6 +18,7 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
 */
 
+#include "Globals.h"
 #include "Reads.h"
 #include "KMerHashTable.h"
 #include "Utility.h"
@@ -28,8 +29,7 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 #ifdef	__cplusplus
 extern "C" {
 #endif
-    
-typedef struct Correction Correction;
+
 typedef bool (*CorrectionFunction)(struct read* read, Correction* correction);
 
 struct Correction

source/Globals.h

@@ -25,6 +25,8 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 extern "C" {
 #endif
 
+typedef struct Correction Correction;
+
 // Deprecated:
 enum SEQUENCING_TECHNOLOGY
 {

source/KMerHashTable.h

@@ -18,6 +18,7 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
 */
 
+#include "Globals.h"
 #include "hash-table.h"
 
 #ifndef KMERHASHTABLE_H
@@ -27,8 +28,6 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 extern "C" {
 #endif
 
-typedef struct Correction Correction;
-    
 typedef struct
 {
     HashTable* table;