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Effect of PR2's different taxLevels on dada2taxonomy.R? #7

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DiegoBrambilla opened this issue Oct 1, 2019 · 0 comments
Open

Effect of PR2's different taxLevels on dada2taxonomy.R? #7

DiegoBrambilla opened this issue Oct 1, 2019 · 0 comments

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@DiegoBrambilla
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Hi,
according to DECIPHER people, PR2 has different taxLevels than the dada2 default. When assigning taxonomy against PR2, use the following: assignTaxonomy(..., taxLevels = c("Kingdom","Supergroup","Division","Class","Order","Family","Genus","Species"))
Does using PR2 ad reference database imply some silght modification to dada2taxonomy.R because of that?
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@DiegoBrambilla