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add mch/climana uenv that provides everything needed for imagemagick (#157)
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-4
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11 files changed

+846
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lines changed

‎config.yaml

Lines changed: 14 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -4,12 +4,14 @@ clusters:
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-
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uarch: 'a100'
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partition: 'normal'
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variables:
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F7T_URL: 'https://api.cscs.ch/mch/firecrest/v1'
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-
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uarch: 'zen3'
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partition: 'postproc'
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runner:
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slurm-tag: balfrin-spack-stack-builder
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baremetal-tag: balfrin-login-baremetal
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variables:
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F7T_URL: 'https://api.cscs.ch/mch/firecrest/v1'
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runner: f7t
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daint:
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targets:
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-
@@ -35,7 +37,6 @@ clusters:
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SLURM_CONSTRAINT: 'mc'
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F7T_URL: 'https://firecrest-dev.cscs.ch'
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runner: f7t
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#no_bwrap: True
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santis:
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targets:
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-
@@ -71,6 +72,15 @@ uenvs:
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deploy:
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balfrin: [zen3, a100]
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develop: False
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climana:
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"24.10":
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recipes:
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zen2: mch/climana/24.10
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zen3: mch/climana/24.10
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a100: mch/climana/24.10
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deploy:
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balfrin: [zen3, a100]
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develop: False
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editors:
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"24.7":
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recipes:

‎recipes/mch/climana/24.10/compilers.yaml

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@@ -0,0 +1,5 @@
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bootstrap:
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spec: [email protected]
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gcc:
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specs:
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- [email protected]

‎recipes/mch/climana/24.10/config.yaml

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name: mch
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store: /user-environment
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spack:
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commit: releases/v0.22
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repo: https://github.com/spack/spack.git
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description: MCH climate analysys toolkit

‎recipes/mch/climana/24.10/environments.yaml

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climana:
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compiler:
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- toolchain: gcc
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spec: gcc@12
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unify: when_possible
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mpi:
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spec: [email protected]
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packages:
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- perl
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- autoconf
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- m4
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- automake
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- texinfo
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- libtool
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- gawk
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- curl
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specs:
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# choose fftw instead of the default intel-oneapi-mkl.
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# this saves ~2GB of space, and reduces image build time.
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- cdo ^[virtuals=fftw-api] fftw
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- gdal
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- geos
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- gsl
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- [email protected] +fortran +threadsafe ~mpi
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- imagemagick
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- ncview
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- nco
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- ncl
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- [email protected]~mpi ^hdf5~mpi api=v18
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- proj
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- [email protected]
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- sqlite
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- udunits
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# R and its packages
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# +X is required for png, tiff, jpeg, etc support
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- [email protected] +X
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# install here so that the openssl built by Spack is used.
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- r-curl
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# R needs to find all of the following use pkg-config
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# so we add them to the view, where they will be picked up.
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- freetype
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- fribidi
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- glib
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- harfbuzz
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- libjpeg-turbo
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- libpng
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- libtiff
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- zstd
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# required as a runtime dependency of the ssl R package
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- openssl
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views:
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climana:
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link: roots
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uenv:
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prefix_paths:
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LD_LIBRARY_PATH: [lib, lib64]

‎recipes/mch/climana/24.10/modules.yaml

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modules:
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# Paths to check when creating modules for all module sets
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prefix_inspections:
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bin:
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- PATH
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lib:
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- LD_LIBRARY_PATH
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lib64:
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- LD_LIBRARY_PATH
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lib/pkgconfig:
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- PKG_CONFIG_PATH
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lib64/pkgconfig:
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- PKG_CONFIG_PATH
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default:
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arch_folder: false
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# Where to install modules
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roots:
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tcl: /user-environment/modules
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tcl:
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all:
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autoload: none
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netcdf-c:
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environment:
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set:
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NETCDF_C_ROOT: '{prefix}'
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hash_length: 0
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exclude_implicits: true
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include:
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- hdf5
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- zlib+shared
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exclude:
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- '%[email protected]'
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- 'gcc %[email protected]'
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projections:
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all: '{name}/{version}'

‎recipes/mch/climana/24.10/post-install

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#!/bin/bash
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# don't generate an error message if a glob does not match any files
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shopt -s nullglob
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# where all of the applications built by spack are installed
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# this has to change if
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# - the compiler version used to build software changes
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# - we build for a different micro-architecture
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# - we upgrade to SLES 16
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install_base=/user-environment/linux-sles15-zen3/gcc-12.3.0
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view_base=/user-environment/env/climana
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# iterate over all of the locations where pkgconfig files are likely to be installed
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for pkbase in "lib/pkgconfig" "lib64/pkgconfig" "share/pkgconfig" "rlib/pkgconfig"
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do
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# find all directories that match the pattern
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pkgpaths=$(find $install_base -type d -path '*/'$pkbase)
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# iterate over each directory, searching for pkg-config .pc files
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for pkpath in $pkgpaths
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do
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pcfiles=($pkpath/*.pc)
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for pcpath in ${pcfiles[@]}
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do
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pcfile=$(basename $pcpath)
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from=$pkpath/$pcfile
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to_root=$view_base/$pkbase
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to=$to_root/$pcfile
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mkdir -p $to_root
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if [ ! -e $to ]; then
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echo '+ ' $pkbase/$pcfile
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ln -s "$from" "$to"
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else
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echo 'skip ' $pkbase/$pcfile
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fi
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done
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done
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done

‎recipes/mch/climana/24.10/repo/packages/r/change_optflags_tmp.patch

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diff -ur R-3.6.3.org/configure R-3.6.3/configure
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--- R-3.6.3.org/configure 2020-03-09 11:09:16.060825352 +0900
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+++ R-3.6.3/configure 2020-03-09 11:10:47.011280195 +0900
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@@ -6470,13 +6470,13 @@
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CFLAGS=$ac_save_CFLAGS
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elif test $ac_cv_prog_cc_g = yes; then
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if test "$GCC" = yes; then
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- CFLAGS="-g -O2"
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+ CFLAGS="-g -O1"
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else
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CFLAGS="-g"
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fi
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else
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if test "$GCC" = yes; then
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- CFLAGS="-O2"
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+ CFLAGS="-O1"
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else
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CFLAGS=
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fi
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@@ -7445,13 +7445,13 @@
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FCFLAGS=$ac_save_FCFLAGS
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elif test $ac_cv_prog_fc_g = yes; then
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if test "x$ac_cv_fc_compiler_gnu" = xyes; then
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- FCFLAGS="-g -O2"
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+ FCFLAGS="-g -O1"
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else
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FCFLAGS="-g"
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fi
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else
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if test "x$ac_cv_fc_compiler_gnu" = xyes; then
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- FCFLAGS="-O2"
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+ FCFLAGS="-O1"
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else
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FCFLAGS=
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fi
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@@ -7717,13 +7717,13 @@
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CXXFLAGS=$ac_save_CXXFLAGS
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elif test $ac_cv_prog_cxx_g = yes; then
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if test "$GXX" = yes; then
40+
- CXXFLAGS="-g -O2"
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+ CXXFLAGS="-g -O1"
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else
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CXXFLAGS="-g"
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fi
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else
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if test "$GXX" = yes; then
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- CXXFLAGS="-O2"
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+ CXXFLAGS="-O1"
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else
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CXXFLAGS=
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fi
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@@ -8336,13 +8336,13 @@
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OBJCFLAGS=$ac_save_OBJCFLAGS
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elif test $ac_cv_prog_objc_g = yes; then
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if test "$GOBJC" = yes; then
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- OBJCFLAGS="-g -O2"
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+ OBJCFLAGS="-g -O1"
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else
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OBJCFLAGS="-g"
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fi
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else
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if test "$GOBJC" = yes; then
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- OBJCFLAGS="-O2"
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+ OBJCFLAGS="-O1"
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else
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OBJCFLAGS=
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fi

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