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Add small test data set for installation validation #2

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jbeaulaurier opened this issue Dec 11, 2017 · 0 comments
Open

Add small test data set for installation validation #2

jbeaulaurier opened this issue Dec 11, 2017 · 0 comments
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@jbeaulaurier
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jbeaulaurier commented Dec 11, 2017

  • mbin version: 1.0
  • Python version: 2.7

Description

Need to identify a good (small) test set of aligned and unaligned reads to be included in the package for testing purposes.

Details

There are some good data sets included in the pbcore data:

  1. BAM of aligned reads:
    m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam
    here

  2. cmp.h5 of aligned reads:
    m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.cmp.h5
    here

  3. bax.h5 of unaligned E. coli K12 reads:
    m140912_020930_00114_c100702482550000001823141103261590_s1_p0
    movie.1.bax.h5
    movie.2.bax.h5
    movie.3.bax.h5
    bas.h5

  4. BAM of unaligned reads:
    possibly here
    otherwise the bax2bam output of m140912_020930_00114_c100702482550000001823141103261590_s1_p0 above

@jbeaulaurier jbeaulaurier self-assigned this Dec 11, 2017
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