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LICENSE

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Allen Institute Software License – This software license is the 2-clause BSD license
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plus a third clause that prohibits redistribution for commercial purposes without further permission.
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Copyright © 2017. Allen Institute. All rights reserved.
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Redistribution and use in source and binary forms, with or without modification, are permitted provided that the
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following conditions are met:
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1. Redistributions of source code must retain the above copyright notice, this list of conditions and the
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following disclaimer.
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2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the
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following disclaimer in the documentation and/or other materials provided with the distribution.
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3. Redistributions for commercial purposes are not permitted without the Allen Institute’s written permission.
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For purposes of this license, commercial purposes is the incorporation of the Allen Institute's software into
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anything for which you will charge fees or other compensation. Contact [email protected] for commercial
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licensing opportunities.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
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INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE
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USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

README.md

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These are a set of python based processing modules that do a broad assortment of steps in various image processing workflows whose results are ultimately stored in render. They make extensive use of the render-python library (www.github.com/fcollman/render-python) for reading metadata from render and sending it back.
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# support
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This code is an important part of the Allen Institute for Brain Science code base and we are actively using and maintaining it. Issues are encouraged, but because this tool is so central to our mission pull requests might not be accepted if they conflict with our existing plans.
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# running a module
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Each module is designed to be run using a common pattern for defining inputs that is setup using the argschema pattern.
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www.github.com/AllenInstitute/argschema
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# notebooks
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a set of ipython notebooks that show some more interactive use of render-python and render-python apps. Mostly specific to the allen in terms of data sources, but perhaps still useful.
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Copyright 2017 Allen Institute

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