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lacz.gb
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LOCUS X16313 479 bp mRNA linear BCT 26-JUL-2016
DEFINITION E.coli mRNA for lacZ 5'-region.
ACCESSION X16313
VERSION X16313.1
KEYWORDS lacZ gene; transcription terminator.
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 479)
AUTHORS Ruteshouser,E.C. and Richardson,J.P.
TITLE Identification and characterization of transcription termination
sites in the Escherichia coli lacZ gene
JOURNAL J. Mol. Biol. 208 (1), 23-43 (1989)
PUBMED 2475637
COMMENT Data kindly reviewed (26-OCT-1989) by Ruteshouser E. C.
FEATURES Location/Qualifiers
source 1..479
/organism="Escherichia coli"
/mol_type="mRNA"
/db_xref="taxon:562"
/clone="pMC1"
repeat_region 1..19
/note="inverted repeat 1"
repeat_region 36..49
/note="inverted repeat 2"
CDS 39..>479
/note="unnamed protein product; lacZ 5'-region"
/codon_start=1
/transl_table=11
/protein_id="CAA34380.1"
/db_xref="GOA:Q47340"
/db_xref="HSSP:1BGL"
/db_xref="InterPro:IPR006104"
/db_xref="InterPro:IPR008979"
/db_xref="UniProtKB/TrEMBL:Q47340"
/translation="MTMITDSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEAR
TDRPSQQLRSLNGEWRFAWFPAPEAVPESWLECDLPEADTVVVPSNWQMHGYDAPIYT
NVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGV"
repeat_region 57..67
/note="inverted repeat 3"
repeat_region 77..85
/note="inverted repeat 3'"
repeat_region 88..90
/note="inverted repeat 4"
repeat_region 95..98
/note="inverted repeat 4'"
repeat_region 99..105
/note="inverted repeat 5"
repeat_region 113..120
/note="inverted repeat 5'"
repeat_region 126..133
/note="inverted repeat 6"
repeat_region 135..166
/note="inverted repeat 7"
repeat_region 178..215
/note="inverted repeat 7'"
regulatory 179..181
/regulatory_class="terminator"
/note="rho-dependent termination site"
regulatory 219..221
/regulatory_class="terminator"
/note="rho-dependent termination site"
repeat_region 222..238
/note="inverted repeat 8"
repeat_region 245..261
/note="inverted repeat 8'"
repeat_region 263..269
/note="inverted repeat 6'"
repeat_region 271..286
/note="inverted repeat 9"
repeat_region 295..316
/note="inverted repeat 9'"
repeat_region 321..330
/note="inverted repeat 10"
repeat_region 344..350
/note="inverted repeat 10'"
repeat_region 360..375
/note="inverted repeat 2'"
regulatory 378..380
/regulatory_class="terminator"
/note="rho-dependent termination site"
repeat_region 384..390
/note="inverted repeat 11"
repeat_region 396..403
/note="inverted repeat 11'"
repeat_region 404..421
/note="inverted repeat 1'"
regulatory 420..422
/regulatory_class="terminator"
/note="rho-independent termination site"
repeat_region 437..441
/note="inverted repeat 12"
repeat_region 451..455
/note="inverted repeat 12'"
regulatory 463..465
/regulatory_class="terminator"
/note="rho-dependent termination site"
ORIGIN
1 aattgtgagc ggataacaat ttcacacagg aaacagctat gaccatgatt acggattcac
61 tggccgtcgt tttacaacgt cgtgactggg aaaaccctgg cgttacccaa cttaatcgcc
121 ttgcagcaca tccccctttc gccagctggc gtaatagcga agaggcccgc accgatcgcc
181 cttcccaaca gttgcgcagc ctgaatggcg aatggcgctt tgcctggttt ccggcaccag
241 aagcggtgcc ggaaagctgg ctggagtgcg atcttcctga ggccgatact gtcgtcgtcc
301 cctcaaactg gcagatgcac ggttacgatg cgcccatcta caccaacgta acctatccca
361 ttacggtcaa tccgccgttt gttcccacgg agaatccgac gggttgttac tcgctcacat
421 ttaatgttga tgaaagctgg ctacaggaag gccagacgcg aattattttt gatggcgtt
//