diff --git a/models/json/beacon-v2-default-model/genomicVariations/defaultSchema.json b/models/json/beacon-v2-default-model/genomicVariations/defaultSchema.json index 394bef5c..19d42db1 100644 --- a/models/json/beacon-v2-default-model/genomicVariations/defaultSchema.json +++ b/models/json/beacon-v2-default-model/genomicVariations/defaultSchema.json @@ -1,5 +1,5 @@ { - "$comment": "version: ga4gh-beacon-variant-v2.0.0", + "$comment": "version: ga4gh-beacon-variant-v2.1.0", "$defs": { "CaseLevelVariant": { "description": "", @@ -272,7 +272,7 @@ "type": "string" }, "location": { - "$ref": "https://w3id.org/ga4gh/schema/vrs/1.2/vrs.json#/definitions/Location" + "$ref": "https://w3id.org/ga4gh/schema/vrs/1.3/vrs.json#/definitions/Location" }, "referenceBases": { "description": "Reference bases for this variant (starting from `start`). * Accepted values: IUPAC codes for nucleotides (e.g. `https://www.bioinformatics.org/sms/iupac.html`). * N is a wildcard, that denotes the position of any base, and can be used\n as a standalone base of any type or within a partially known sequence.\n* an *empty value* is used in the case of insertions with the maximally\n trimmed, inserted sequence being indicated in `AlternateBases`.", @@ -557,10 +557,10 @@ "variation": { "oneOf": [ { - "$ref": "https://w3id.org/ga4gh/schema/vrs/1.2/vrs.json#/definitions/MolecularVariation" + "$ref": "https://w3id.org/ga4gh/schema/vrs/1.3/vrs.json#/definitions/MolecularVariation" }, { - "$ref": "https://w3id.org/ga4gh/schema/vrs/1.2/vrs.json#/definitions/SystemicVariation" + "$ref": "https://w3id.org/ga4gh/schema/vrs/1.3/vrs.json#/definitions/SystemicVariation" }, { "$ref": "#/$defs/LegacyVariation" diff --git a/models/src/beacon-v2-default-model/genomicVariations/defaultSchema.yaml b/models/src/beacon-v2-default-model/genomicVariations/defaultSchema.yaml index b5e5cc9e..df68f4d7 100644 --- a/models/src/beacon-v2-default-model/genomicVariations/defaultSchema.yaml +++ b/models/src/beacon-v2-default-model/genomicVariations/defaultSchema.yaml @@ -1,6 +1,6 @@ $schema: https://json-schema.org/draft/2020-12/schema title: Genomic Variation -$comment: 'version: ga4gh-beacon-variant-v2.0.0' +$comment: 'version: ga4gh-beacon-variant-v2.1.0' description: >- Schema for a genomic variant entry. type: object @@ -10,8 +10,8 @@ required: properties: variation: oneOf: - - $ref: https://w3id.org/ga4gh/schema/vrs/1.2/vrs.json#/definitions/MolecularVariation - - $ref: https://w3id.org/ga4gh/schema/vrs/1.2/vrs.json#/definitions/SystemicVariation + - $ref: https://w3id.org/ga4gh/schema/vrs/1.3/vrs.json#/definitions/MolecularVariation + - $ref: https://w3id.org/ga4gh/schema/vrs/1.3/vrs.json#/definitions/SystemicVariation - $ref: '#/$defs/LegacyVariation' variantInternalId: description: >- @@ -51,7 +51,7 @@ $defs: - location properties: location: - $ref: https://w3id.org/ga4gh/schema/vrs/1.2/vrs.json#/definitions/Location + $ref: https://w3id.org/ga4gh/schema/vrs/1.3/vrs.json#/definitions/Location variantType: description: >- The `variantType` declares the nature of the variation in relation