Skip to content

issues Search Results · repo:ga4gh/ga4gh-schemas language:Python

Filter by

0 results
 (76 ms)

0 results

inga4gh/ga4gh-schemas (press backspace or delete to remove)

ga4gh/ga4gh-schemas
AnalysisResult scores

I d like to make sure I understand properly how to use AnalysisResult records Say the data contains a SIFT annotations that says deleterious(0.01) . Is it correct to fill in the AnalysisResult with SIFT ...
  • GuilhemSempere
  • Opened 
    on Nov 16, 2017
  • #886

ga4gh/ga4gh-schemas
ListReferenceBasesRequest GET or POST

Comparing http://ga4gh-schemas.readthedocs.io/en/documentation/schemas/referencemethods.html#avro.ListReferenceBasesRequest with http://ga4gh-schemas.readthedocs.io/en/documentation/schemas/referencemethods.html#avro.SearchReferencesRequest ...
  • GuilhemSempere
  • 1
  • Opened 
    on Nov 9, 2017
  • #885

ga4gh/ga4gh-schemas
GeoLocation attributes names

https://github.com/ga4gh/ga4gh-schemas/blob/metadata-integration/src/main/proto/ga4gh/common.proto#L175 @mbaudis: should we rename geo_label and geo_precision to label and precision respectively? Other ...
MetadataTaskTeam
  • mcourtot
  • 1
  • Opened 
    on Sep 5, 2017
  • #882

ga4gh/ga4gh-schemas
Assay Metadata for Analysis object table is broken in documentation...

The table for the Analysis Object in the documentation is broken. https://github.com/ga4gh/ga4gh-schemas/blob/master/doc/source/api/assaymetadata.rst Brian
  • bcorrie
  • Opened 
    on Jun 18, 2017
  • #877

ga4gh/ga4gh-schemas
Change booleans to enums

For any field where the default boolean should not be considered false, we should offer an enum that states no value selected or null that is the default. This is currently a bug that makes documents incorrect ...
bug
  • david4096
  • Opened 
    on Mar 24, 2017
  • #869

ga4gh/ga4gh-schemas
protobuf java square write code-gen

#I m trying to generate code from the GA4GH-schema proto files using: https://github.com/square/wire At the moment I am chasing down file dependencies as maven is telling me: Wire Plugin: Failure compiling ...
  • jpdna
  • 3
  • Opened 
    on Mar 22, 2017
  • #868

ga4gh/ga4gh-schemas
Update Java Protobuf Dependency to 3.1+

It s set to 3.0.0b3, we should move to the stable release https://github.com/ga4gh/ga4gh-schemas/blob/master/pom.xml#L41 https://github.com/bigdatagenomics/mango/issues/276
  • david4096
  • Opened 
    on Mar 15, 2017
  • #865

ga4gh/ga4gh-schemas
Recreate assay metadata

The assay metadata file was folded into common. This file should be added back and imported by common.
Infrastructure
  • david4096
  • 2
  • Opened 
    on Mar 9, 2017
  • #857

ga4gh/ga4gh-schemas
Deprecate reference ID in favor of reference name or accession ID

There is currently a split in the API where some endpoints (reads) expect a reference ID, while other s expect a name. We have been unable to enforce ID everywhere in previous pull requests. This issue ...
API Consistency
enhancement
  • david4096
  • 1
  • Opened 
    on Mar 9, 2017
  • #856

ga4gh/ga4gh-schemas
Implement updated transcript effects protocol

Goes with https://github.com/ga4gh/ga4gh-schemas/pull/706
API Consistency
Variant Annotation
  • david4096
  • Opened 
    on Mar 9, 2017
  • #855
Issue origami icon

Learn how you can use GitHub Issues to plan and track your work.

Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub Issues
ProTip! 
Restrict your search to the title by using the in:title qualifier.
Issue origami icon

Learn how you can use GitHub Issues to plan and track your work.

Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub Issues
ProTip! 
Press the
/
key to activate the search input again and adjust your query.
Issue search results · GitHub