diff --git a/DESCRIPTION b/DESCRIPTION index d3b337d..dee08d8 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -81,10 +81,6 @@ Imports: VGAM Suggests: magick, - BSgenome.Hsapiens.UCSC.hg38, - BSgenome.Hsapiens.NCBI.GRCh38, - BSgenome.Hsapiens.1000genomes.hs37d5, - BSgenome.Hsapiens.UCSC.hg19, BiocStyle, knitr, rmarkdown, diff --git a/tests/testthat/test_updateSeqlevelsStyle.R b/tests/testthat/test_updateSeqlevelsStyle.R index 8d55b18..6124767 100644 --- a/tests/testthat/test_updateSeqlevelsStyle.R +++ b/tests/testthat/test_updateSeqlevelsStyle.R @@ -4,10 +4,6 @@ if (!requireNamespace('BiocManager', quietly = TRUE)) { } test_that("hg38, UCSC to NCBI", { - #if (!requireNamespace('BiocManager', quietly = TRUE)) { - # install.packages('BiocManager') - # BiocManager::install("remotes") - #} BiocManager::install("BSgenome.Hsapiens.UCSC.hg38", ask=FALSE, update=FALSE) @@ -26,7 +22,7 @@ test_that("hg38, NCBI to UCSC", { # install.packages('BiocManager') #} - #BiocManager::install("BSgenome.Hsapiens.NCBI.GRCh38", ask=FALSE, update=FALSE) + BiocManager::install("BSgenome.Hsapiens.NCBI.GRCh38", ask=FALSE, update=FALSE) genome <- getBSgenome("GRCh38") bsgenome <- genome @@ -43,7 +39,7 @@ test_that("hg19, NCBI to UCSC", { # install.packages('BiocManager') #} - #BiocManager::install("BSgenome.Hsapiens.1000genomes.hs37d5", ask=FALSE, update=FALSE) + BiocManager::install("BSgenome.Hsapiens.1000genomes.hs37d5", ask=FALSE, update=FALSE) genome <- getBSgenome("hs37d5") bsgenome <- genome @@ -58,7 +54,7 @@ test_that("hg19, UCSC to NCBI", { #if (!requireNamespace('BiocManager', quietly = TRUE)) { # install.packages('BiocManager') #} - #BiocManager::install("BSgenome.Hsapiens.UCSC.hg19", ask=FALSE, update=FALSE) + BiocManager::install("BSgenome.Hsapiens.UCSC.hg19", ask=FALSE, update=FALSE) genome <- getBSgenome("hg19") bsgenome <- genome