Removing debug code.

Author: emarinier

tools/tb-profiler/tb_profiler_profile.xml

@@ -31,7 +31,6 @@
         #end if
 
         tb-profiler profile
-            --prefix tbprofiler
             --platform '${platform.value}'
             ${spoligotype}
         #if str($fastq_or_bam.input_select.value) in ("paired_fastq", "paired_collection_fastq", "single_fastq")
@@ -69,7 +68,6 @@
         #if str($fastq_or_bam.input_select) != "bam"
             && mv bam/tbprofiler.bam '${output_bam}'
         #end if
-        && ls -la; ls -la vcf
         && bcftools view -Ov -o '${output_vcf}' vcf/tbprofiler.targets.vcf.gz
         #if $output_format == "pdf"
             && mv results/tbprofiler.results.pdf '${output_pdf}'