Merge pull request #6736 from bebatut/fix_ivar_biotools

bgruening · web-flow · commit b548a504e88b · 2025-02-10T15:55:10.000+01:00
Fix ivar biotools in macros
diff --git a/tools/ivar/ivar_consensus.xml b/tools/ivar/ivar_consensus.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements"/>
     <expand macro="version_command"/>
     <command detect_errors="exit_code"><![CDATA[
diff --git a/tools/ivar/ivar_filtervariants.xml b/tools/ivar/ivar_filtervariants.xml
@@ -3,6 +3,7 @@
         <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements"/>
     <expand macro="version_command"/>
     <command detect_errors="exit_code"><![CDATA[
diff --git a/tools/ivar/ivar_removereads.xml b/tools/ivar/ivar_removereads.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements"/>
     <expand macro="version_command"/>
     <command detect_errors="exit_code"><![CDATA[
diff --git a/tools/ivar/ivar_trim.xml b/tools/ivar/ivar_trim.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements"/>
     <expand macro="version_command"/>
     <command detect_errors="exit_code"><![CDATA[
diff --git a/tools/ivar/ivar_variants.xml b/tools/ivar/ivar_variants.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="xrefs"/>
     <expand macro="requirements"/>
     <expand macro="version_command"/>
     <command detect_errors="exit_code"><![CDATA[
diff --git a/tools/ivar/macros.xml b/tools/ivar/macros.xml
@@ -13,9 +13,11 @@
   <xml name="version_command">
     <version_command>ivar version | grep version</version_command>
   </xml>
-  <xrefs>
-    <xref type="bio.tools">andersen-lab_ivar</xref>
-  </xrefs>
+  <xml name="xrefs">
+    <xrefs>
+      <xref type="bio.tools">andersen-lab_ivar</xref>
+    </xrefs>
+  </xml>
   <xml name="citations">
     <citations>
       <citation type="doi">10.1186/s13059-018-1618-7</citation>
