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I'm a very very beginner in bioinfo and using Docker is new for me.
I've installed Docker engine only, bcs my machine doesnt allow Docker desktop.
Seqlink seems to run correctly
However, I try to test it using testdata, but
1- some arguments in commands are not recognized. Maybe I am working in a different version?
2- files are not found. Where test files would be located?
I want to work with my own exome data, but I also dont have a blueprint file. Seqlinkage documentation says there is a default file. Also, where could I find it? I'd need to convert to GCh38 using LiftOver
Thank you!!
The text was updated successfully, but these errors were encountered:
yasminsoares
changed the title
Where are the test data?
Where are the test data located (Docker)?
Nov 25, 2022
Hii,
I'm a very very beginner in bioinfo and using Docker is new for me.
![seqlinkage ok](https://user-images.githubusercontent.com/10846991/204017464-6588bb44-b804-4ebd-bf6f-afec6f12eec1.png)
I've installed Docker engine only, bcs my machine doesnt allow Docker desktop.
Seqlink seems to run correctly
However, I try to test it using testdata, but
![seqlinkage 1](https://user-images.githubusercontent.com/10846991/204017772-86ee1991-6508-413d-9b83-6b6c70024a89.png)
1- some arguments in commands are not recognized. Maybe I am working in a different version?
2- files are not found. Where test files would be located?
I want to work with my own exome data, but I also dont have a blueprint file. Seqlinkage documentation says there is a default file. Also, where could I find it? I'd need to convert to GCh38 using LiftOver
Thank you!!
The text was updated successfully, but these errors were encountered: