diff --git a/metadata/go-reference-species.yaml b/metadata/go-reference-species.yaml
index df89b074..8f817a15 100644
--- a/metadata/go-reference-species.yaml
+++ b/metadata/go-reference-species.yaml
@@ -1,4 +1,8 @@
 #### PANTHER_VERSION=17.0
+- common_name: Amborella
+  organism: Amborella trichopoda
+  reference_proteome_short_name: AMBTC
+  taxon_id: NCBITaxon:13333
 - common_name: lizard
   organism: Anolis carolinensis
   reference_proteome_short_name: ANOCA
@@ -7,18 +11,6 @@
   organism: Anopheles gambiae
   reference_proteome_short_name: ANOGA
   taxon_id: NCBITaxon:7165
-- common_name: bacillus_cereus
-  organism: Bacillus cereus
-  reference_proteome_short_name: BACCR
-  taxon_id: NCBITaxon:226900
-- common_name: cow
-  organism: Bos taurus
-  reference_proteome_short_name: BOVIN
-  taxon_id: NCBITaxon:9913
-- common_name: purple_false_brome
-  organism: Brachypodium distachyon
-  reference_proteome_short_name: BRADI
-  taxon_id: NCBITaxon:15368
 - common_name: aquifex
   organism: Aquifex aeolicus
   reference_proteome_short_name: AQUAE
@@ -31,14 +23,46 @@
   organism: Ashbya gossypii
   reference_proteome_short_name: ASHGO
   taxon_id: NCBITaxon:284811
+- common_name: bacillus_cereus
+  organism: Bacillus cereus
+  reference_proteome_short_name: BACCR
+  taxon_id: NCBITaxon:226900
 - common_name: bacillus_subtilis
   organism: Bacillus subtilis
   reference_proteome_short_name: BACSU
   taxon_id: NCBITaxon:224308
+- common_name: bacteroidetes
+  organism: Bacteroides thetaiotaomicron
+  reference_proteome_short_name: BACTN
+  taxon_id: NCBITaxon:226186
 - common_name: chytrid
   organism: Batrachochytrium dendrobatidis
   reference_proteome_short_name: BATDJ
   taxon_id: NCBITaxon:684364
+- common_name: cow
+  organism: Bos taurus
+  reference_proteome_short_name: BOVIN
+  taxon_id: NCBITaxon:9913
+- common_name: purple_false_brome
+  organism: Brachypodium distachyon
+  reference_proteome_short_name: BRADI
+  taxon_id: NCBITaxon:15368
+- common_name: bradyrhizobium
+  organism: Bradyrhizobium diazoefficiens
+  reference_proteome_short_name: BRADU
+  taxon_id: NCBITaxon:224911
+- common_name: branchiostoma
+  organism: Branchiostoma floridae
+  reference_proteome_short_name: BRAFL
+  taxon_id: NCBITaxon:7739
+- common_name: canola
+  organism: Brassica napus
+  reference_proteome_short_name: BRANA
+  taxon_id: NCBITaxon:3708
+- common_name: cabbage
+  organism: Brassica rapa subsp. pekinensis
+  reference_proteome_short_name: BRARP
+  taxon_id: NCBITaxon:51351
 - common_name: c_briggsae
   organism: Caenorhabditis briggsae
   reference_proteome_short_name: CAEBR
@@ -47,18 +71,54 @@
   organism: Caenorhabditis elegans
   reference_proteome_short_name: CAEEL
   taxon_id: NCBITaxon:6239
+- common_name: candida
+  organism: Candida albicans
+  reference_proteome_short_name: CANAL
+  taxon_id: NCBITaxon:237561
 - common_name: dog
   organism: Canis lupus familiaris
   reference_proteome_short_name: CANLF
   taxon_id: NCBITaxon:9615
+- common_name: bell pepper
+  organism: Capsicum annuum
+  reference_proteome_short_name: CAPAN
+  taxon_id: NCBITaxon:4072
+- common_name: chlamydia
+  organism: Chlamydia trachomatis
+  reference_proteome_short_name: CHLTR
+  taxon_id: NCBITaxon:272561
 - common_name: green_algae
   organism: Chlamydomonas reinhardtii
   reference_proteome_short_name: CHLRE
   taxon_id: NCBITaxon:3055
+- common_name: chloroflexus
+  organism: Chloroflexus aurantiacus
+  reference_proteome_short_name: CHLAA
+  taxon_id: NCBITaxon:324602
 - common_name: ciona
   organism: Ciona intestinalis
   reference_proteome_short_name: CIOIN
   taxon_id: NCBITaxon:7719
+- common_name: orange
+  organism: Citrus sinensis
+  reference_proteome_short_name: CITSI
+  taxon_id: NCBITaxon:2711
+- common_name: clostridium
+  organism: Clostridium botulinum
+  reference_proteome_short_name: CLOBH
+  taxon_id: NCBITaxon:441771
+- common_name: coxiella
+  organism: Coxiella burnetii
+  reference_proteome_short_name: COXBU
+  taxon_id: NCBITaxon:227377
+- common_name: cryptococcus
+  organism: Cryptococcus neoformans
+  reference_proteome_short_name: CRYNJ
+  taxon_id: NCBITaxon:214684
+- common_name: cucumber
+  organism: Cucumis sativus
+  reference_proteome_short_name: CUCSA
+  taxon_id: NCBITaxon:3659
 - common_name: zebrafish
   organism: Danio rerio
   reference_proteome_short_name: DANRE
@@ -67,6 +127,14 @@
   organism: Daphnia pulex
   reference_proteome_short_name: DAPPU
   taxon_id: NCBITaxon:6669
+- common_name: deinococcus
+  organism: Deinococcus radiodurans
+  reference_proteome_short_name: DEIRA
+  taxon_id: NCBITaxon:243230
+- common_name: dictyoglomus
+  organism: Dictyoglomus turgidum
+  reference_proteome_short_name: DICTD
+  taxon_id: NCBITaxon:515635
 - common_name: dictyostelium
   organism: Dictyostelium discoideum
   reference_proteome_short_name: DICDI
@@ -79,6 +147,10 @@
   organism: Drosophila melanogaster
   reference_proteome_short_name: DROME
   taxon_id: NCBITaxon:7227
+- common_name: aspergillus
+  organism: Emericella nidulans
+  reference_proteome_short_name: EMENI
+  taxon_id: NCBITaxon:227321
 - common_name: entamoeba
   organism: Entamoeba histolytica
   reference_proteome_short_name: ENTHI
@@ -87,78 +159,30 @@
   organism: Equus caballus
   reference_proteome_short_name: HORSE
   taxon_id: NCBITaxon:9796
+- common_name: yellow monkey flower
+  organism: Erythranthe guttata
+  reference_proteome_short_name: ERYGU
+  taxon_id: NCBITaxon:4155
 - common_name: e_coli
   organism: Escherichia coli
   reference_proteome_short_name: ECOLI
   taxon_id: NCBITaxon:83333
+- common_name: flooded gum
+  organism: Eucalyptus grandis
+  reference_proteome_short_name: EUCGR
+  taxon_id: NCBITaxon:71139
 - common_name: cat
   organism: Felis catus
   reference_proteome_short_name: FELCA
   taxon_id: NCBITaxon:9685
-- common_name: chicken
-  organism: Gallus gallus
-  reference_proteome_short_name: CHICK
-  taxon_id: NCBITaxon:9031
-- common_name: soybean
-  organism: Glycine max
-  reference_proteome_short_name: SOYBN
-  taxon_id: NCBITaxon:3847
-- common_name: h_pylori
-  organism: Helicobacter pylori
-  reference_proteome_short_name: HELPY
-  taxon_id: NCBITaxon:85962
-- common_name: helobdella
-  organism: helobdella robusta
-  reference_proteome_short_name: HELRO
-  taxon_id: NCBITaxon:6412
-- common_name: tick
-  organism: Ixodes scapularis
-  reference_proteome_short_name: IXOSC
-  taxon_id: NCBITaxon:6945
-- common_name: lepisosteudae
-  organism: lepisosteus oculatus
-  reference_proteome_short_name: LEPOC
-  taxon_id: NCBITaxon:7918
-- common_name: branchiostoma
-  organism: Branchiostoma floridae
-  reference_proteome_short_name: BRAFL
-  taxon_id: NCBITaxon:7739
-- common_name: candida
-  organism: Candida albicans
-  reference_proteome_short_name: CANAL
-  taxon_id: NCBITaxon:237561
-- common_name: chlamydia
-  organism: Chlamydia trachomatis
-  reference_proteome_short_name: CHLTR
-  taxon_id: NCBITaxon:272561
-- common_name: chloroflexus
-  organism: Chloroflexus aurantiacus
-  reference_proteome_short_name: CHLAA
-  taxon_id: NCBITaxon:324602
-- common_name: clostridium
-  organism: Clostridium botulinum
-  reference_proteome_short_name: CLOBH
-  taxon_id: NCBITaxon:441771
-- common_name: cryptococcus
-  organism: Cryptococcus neoformans
-  reference_proteome_short_name: CRYNJ
-  taxon_id: NCBITaxon:214684
-- common_name: deinococcus
-  organism: Deinococcus radiodurans
-  reference_proteome_short_name: DEIRA
-  taxon_id: NCBITaxon:243230
-- common_name: dictyoglomus
-  organism: Dictyoglomus turgidum
-  reference_proteome_short_name: DICTD
-  taxon_id: NCBITaxon:515635
-- common_name: aspergillus
-  organism: Emericella nidulans
-  reference_proteome_short_name: EMENI
-  taxon_id: NCBITaxon:227321
 - common_name: fusobacterium
   organism: Fusobacterium nucleatum
   reference_proteome_short_name: FUSNN
   taxon_id: NCBITaxon:190304
+- common_name: chicken
+  organism: Gallus gallus
+  reference_proteome_short_name: CHICK
+  taxon_id: NCBITaxon:9031
 - common_name: geobacter
   organism: Geobacter sulfurreducens
   reference_proteome_short_name: GEOSL
@@ -171,10 +195,18 @@
   organism: Gloeobacter violaceus
   reference_proteome_short_name: GLOVI
   taxon_id: NCBITaxon:251221
+- common_name: soybean
+  organism: Glycine max
+  reference_proteome_short_name: SOYBN
+  taxon_id: NCBITaxon:3847
 - common_name: gorilla
   organism: Gorilla gorilla gorilla
   reference_proteome_short_name: GORGO
   taxon_id: NCBITaxon:9595
+- common_name: cotton
+  organism: Gossypium hirsutum
+  reference_proteome_short_name: GOSHI
+  taxon_id: NCBITaxon:3635
 - common_name: h_flu
   organism: Haemophilus influenzae
   reference_proteome_short_name: HAEIN
@@ -183,10 +215,42 @@
   organism: Halobacterium salinarum
   reference_proteome_short_name: HALSA
   taxon_id: NCBITaxon:64091
+- common_name: sunflower
+  organism: Helianthus annuus
+  reference_proteome_short_name: HELAN
+  taxon_id: NCBITaxon:4232
+- common_name: h_pylori
+  organism: Helicobacter pylori
+  reference_proteome_short_name: HELPY
+  taxon_id: NCBITaxon:85962
 - common_name: human
   organism: Homo sapiens
   reference_proteome_short_name: HUMAN
   taxon_id: NCBITaxon:9606
+- common_name: barley
+  organism: Hordeum vulgare subsp. vulgare
+  reference_proteome_short_name: HORVV
+  taxon_id: NCBITaxon:112509
+- common_name: tick
+  organism: Ixodes scapularis
+  reference_proteome_short_name: IXOSC
+  taxon_id: NCBITaxon:6945
+- common_name: english walnut
+  organism: Juglans regia
+  reference_proteome_short_name: JUGRE
+  taxon_id: NCBITaxon:51240
+- common_name: green algae
+  organism: Klebsormidium nitens
+  reference_proteome_short_name: KLENI
+  taxon_id: NCBITaxon:105231
+- common_name: korarchaeum
+  organism: Korarchaeum cryptofilum
+  reference_proteome_short_name: KORCO
+  taxon_id: NCBITaxon:374847
+- common_name: garden lettuce
+  organism: Lactuca sativa
+  reference_proteome_short_name: LACSA
+  taxon_id: NCBITaxon:4236
 - common_name: leishmania
   organism: Leishmania major
   reference_proteome_short_name: LEIMA
@@ -203,6 +267,26 @@
   organism: Macaca mulatta
   reference_proteome_short_name: MACMU
   taxon_id: NCBITaxon:9544
+- common_name: cassava
+  organism: Manihot esculenta
+  reference_proteome_short_name: MANES
+  taxon_id: NCBITaxon:3983
+- common_name: liverwort
+  organism: Marchantia polymorpha
+  reference_proteome_short_name: MARPO
+  taxon_id: NCBITaxon:3197
+- common_name: barrel medic
+  organism: Medicago truncatula
+  reference_proteome_short_name: MEDTR
+  taxon_id: NCBITaxon:3880
+- common_name: methanocaldococcus
+  organism: Methanocaldococcus jannaschii
+  reference_proteome_short_name: METJA
+  taxon_id: NCBITaxon:243232
+- common_name: methanosarcina
+  organism: Methanosarcina acetivorans
+  reference_proteome_short_name: METAC
+  taxon_id: NCBITaxon:188937
 - common_name: opossum
   organism: Monodelphis domestica
   reference_proteome_short_name: MONDO
@@ -211,102 +295,30 @@
   organism: Monosiga brevicollis
   reference_proteome_short_name: MONBE
   taxon_id: NCBITaxon:81824
+- common_name: mouse
+  organism: Mus musculus
+  reference_proteome_short_name: MOUSE
+  taxon_id: NCBITaxon:10090
+- common_name: banana
+  organism: Musa acuminata subsp. malaccensis
+  reference_proteome_short_name: MUSAM
+  taxon_id: NCBITaxon:214687
+- common_name: mycobacterium
+  organism: Mycobacterium tuberculosis
+  reference_proteome_short_name: MYCTU
+  taxon_id: NCBITaxon:83332
+- common_name: meningococcus
+  organism: Neisseria meningitidis serogroup b
+  reference_proteome_short_name: NEIMB
+  taxon_id: NCBITaxon:122586
+- common_name: sacred lotus
+  organism: Nelumbo nucifera
+  reference_proteome_short_name: NELNU
+  taxon_id: NCBITaxon:4432
 - common_name: nematostella
   organism: Nematostella vectensis
   reference_proteome_short_name: NEMVE
   taxon_id: NCBITaxon:45351
-- common_name: platypus
-  organism: Ornithorhynchus anatinus
-  reference_proteome_short_name: ORNAN
-  taxon_id: NCBITaxon:9258
-- common_name: rice
-  organism: Oryza sativa
-  reference_proteome_short_name: ORYSJ
-  taxon_id: NCBITaxon:39947
-- common_name: oryzias
-  organism: Oryzias latipes
-  reference_proteome_short_name: ORYLA
-  taxon_id: NCBITaxon:8090
-- common_name: moss
-  organism: Physcomitrella patens
-  reference_proteome_short_name: PHYPA
-  taxon_id: NCBITaxon:3218
-- common_name: black_cottonwood
-  organism: Populus trichocarpa
-  reference_proteome_short_name: POPTR
-  taxon_id: NCBITaxon:3694
-- common_name: pristionchus
-  organism: Pristionchus pacificus
-  reference_proteome_short_name: PRIPA
-  taxon_id: NCBITaxon:54126
-- common_name: budding_yeast
-  organism: Saccharomyces cerevisiae
-  reference_proteome_short_name: YEAST
-  taxon_id: NCBITaxon:559292
-- common_name: salmonella
-  organism: Salmonella typhimurium
-  reference_proteome_short_name: SALTY
-  taxon_id: NCBITaxon:99287
-- common_name: fission_yeast
-  organism: Schizosaccharomyces pombe
-  reference_proteome_short_name: SCHPO
-  taxon_id: NCBITaxon:4896
-- common_name: shewanella
-  organism: Shewanella oneidensis
-  reference_proteome_short_name: SHEON
-  taxon_id: NCBITaxon:211586
-- common_name: tomato
-  organism: Solanum lycopersicum
-  reference_proteome_short_name: SOLLC
-  taxon_id: NCBITaxon:4081
-- common_name: sorghum
-  organism: Sorghum bicolor
-  reference_proteome_short_name: SORBI
-  taxon_id: NCBITaxon:4558
-- common_name: staph
-  organism: Staphylococcus aureus
-  reference_proteome_short_name: STAA8
-  taxon_id: NCBITaxon:93061
-- common_name: strep
-  organism: Streptococcus pneumoniae
-  reference_proteome_short_name: STRR6
-  taxon_id: NCBITaxon:171101
-- common_name: sea_urchin
-  organism: Strongylocentrotus purpuratus
-  reference_proteome_short_name: STRPU
-  taxon_id: NCBITaxon:7668
-- common_name: pig
-  organism: Sus scrofa
-  reference_proteome_short_name: PIG
-  taxon_id: NCBITaxon:9823
-- common_name: synechocystis
-  organism: Synechocystis
-  reference_proteome_short_name: SYNY3
-  taxon_id: NCBITaxon:1111708
-- common_name: tribolium
-  organism: Tribolium castaneum
-  reference_proteome_short_name: TRICA
-  taxon_id: NCBITaxon:7070
-- common_name: trichoplax
-  organism: Trichoplax adhaerens
-  reference_proteome_short_name: TRIAD
-  taxon_id: NCBITaxon:10228
-- common_name: mouse
-  organism: Mus musculus
-  reference_proteome_short_name: MOUSE
-  taxon_id: NCBITaxon:10090
-- common_name: mycobacterium
-  organism: Mycobacterium tuberculosis
-  reference_proteome_short_name: MYCTU
-  taxon_id: NCBITaxon:83332
-- common_name: m_genitalium
-  organism: mycoplasma genitalium
-  reference_proteome_short_name: MYCGE
-  taxon_id: NCBITaxon:243273
-- common_name: meningococcus
-  organism: Neisseria meningitidis serogroup b
-  reference_proteome_short_name: NEIMB
-  taxon_id: NCBITaxon:122586
 - common_name: aspergillus
   organism: Neosartorya fumigata
   reference_proteome_short_name: ASPFU
@@ -315,10 +327,26 @@
   organism: Neurospora crassa
   reference_proteome_short_name: NEUCR
   taxon_id: NCBITaxon:367110
+- common_name: tobacco
+  organism: Nicotiana tabacum
+  reference_proteome_short_name: TOBAC
+  taxon_id: NCBITaxon:4097
 - common_name: nitrosopumilu
   organism: Nitrosopumilus maritimus
   reference_proteome_short_name: NITMS
   taxon_id: NCBITaxon:436308
+- common_name: platypus
+  organism: Ornithorhynchus anatinus
+  reference_proteome_short_name: ORNAN
+  taxon_id: NCBITaxon:9258
+- common_name: rice
+  organism: Oryza sativa
+  reference_proteome_short_name: ORYSJ
+  taxon_id: NCBITaxon:39947
+- common_name: oryzias
+  organism: Oryzias latipes
+  reference_proteome_short_name: ORYLA
+  taxon_id: NCBITaxon:8090
 - common_name: chimpanzee
   organism: Pan troglodytes
   reference_proteome_short_name: PANTR
@@ -331,6 +359,10 @@
   organism: Phaeosphaeria nodorum
   reference_proteome_short_name: PHANO
   taxon_id: NCBITaxon:321614
+- common_name: moss
+  organism: Physcomitrella patens
+  reference_proteome_short_name: PHYPA
+  taxon_id: NCBITaxon:3218
 - common_name: phytophthora
   organism: Phytophthora ramorum
   reference_proteome_short_name: PHYRM
@@ -339,6 +371,18 @@
   organism: Plasmodium falciparum
   reference_proteome_short_name: PLAF7
   taxon_id: NCBITaxon:36329
+- common_name: black_cottonwood
+  organism: Populus trichocarpa
+  reference_proteome_short_name: POPTR
+  taxon_id: NCBITaxon:3694
+- common_name: pristionchus
+  organism: Pristionchus pacificus
+  reference_proteome_short_name: PRIPA
+  taxon_id: NCBITaxon:54126
+- common_name: peach
+  organism: Prunus persica
+  reference_proteome_short_name: PRUPE
+  taxon_id: NCBITaxon:3760
 - common_name: pseudomonas
   organism: Pseudomonas aeruginosa
   reference_proteome_short_name: PSEAE
@@ -347,6 +391,10 @@
   organism: Puccinia graminis
   reference_proteome_short_name: PUCGT
   taxon_id: NCBITaxon:418459
+- common_name: pyrobaculum
+  organism: Pyrobaculum aerophilum
+  reference_proteome_short_name: PYRAE
+  taxon_id: NCBITaxon:178306
 - common_name: rat
   organism: Rattus norvegicus
   reference_proteome_short_name: RAT
@@ -355,22 +403,94 @@
   organism: Rhodopirellula baltica
   reference_proteome_short_name: RHOBA
   taxon_id: NCBITaxon:243090
+- common_name: bean
+  organism: Ricinus communis
+  reference_proteome_short_name: RICCO
+  taxon_id: NCBITaxon:3988
+- common_name: budding_yeast
+  organism: Saccharomyces cerevisiae
+  reference_proteome_short_name: YEAST
+  taxon_id: NCBITaxon:559292
+- common_name: salmonella
+  organism: Salmonella typhimurium
+  reference_proteome_short_name: SALTY
+  taxon_id: NCBITaxon:99287
+- common_name: s_japonicus
+  organism: Schizosaccharomyces japonicus
+  reference_proteome_short_name: SCHJY
+  taxon_id: NCBITaxon:402676
+- common_name: fission_yeast
+  organism: Schizosaccharomyces pombe
+  reference_proteome_short_name: SCHPO
+  taxon_id: NCBITaxon:4896
 - common_name: sclerotinia
   organism: Sclerotinia sclerotiorum
   reference_proteome_short_name: SCLS1
   taxon_id: NCBITaxon:665079
+- common_name: spikemoss
+  organism: Selaginella moellendorffii
+  reference_proteome_short_name: SELML
+  taxon_id: NCBITaxon:88036
+- common_name: millet
+  organism: Setaria italica
+  reference_proteome_short_name: SETIT
+  taxon_id: NCBITaxon:4555
+- common_name: shewanella
+  organism: Shewanella oneidensis
+  reference_proteome_short_name: SHEON
+  taxon_id: NCBITaxon:211586
+- common_name: tomato
+  organism: Solanum lycopersicum
+  reference_proteome_short_name: SOLLC
+  taxon_id: NCBITaxon:4081
+- common_name: potato
+  organism: Solanum tuberosum
+  reference_proteome_short_name: SOLTU
+  taxon_id: NCBITaxon:4113
+- common_name: sorghum
+  organism: Sorghum bicolor
+  reference_proteome_short_name: SORBI
+  taxon_id: NCBITaxon:4558
+- common_name: spinach
+  organism: Spinacia oleracea
+  reference_proteome_short_name: SPIOL
+  taxon_id: NCBITaxon:3562
+- common_name: staph
+  organism: Staphylococcus aureus
+  reference_proteome_short_name: STAA8
+  taxon_id: NCBITaxon:93061
+- common_name: strep
+  organism: Streptococcus pneumoniae
+  reference_proteome_short_name: STRR6
+  taxon_id: NCBITaxon:171101
 - common_name: streptomyces
   organism: Streptomyces coelicolor
   reference_proteome_short_name: STRCO
   taxon_id: NCBITaxon:100226
+- common_name: sea_urchin
+  organism: Strongylocentrotus purpuratus
+  reference_proteome_short_name: STRPU
+  taxon_id: NCBITaxon:7668
 - common_name: sulfolobus
   organism: Sulfolobus solfataricus
   reference_proteome_short_name: SACS2
   taxon_id: NCBITaxon:273057
+- common_name: pig
+  organism: Sus scrofa
+  reference_proteome_short_name: PIG
+  taxon_id: NCBITaxon:9823
+- common_name: synechocystis
+  organism: Synechocystis
+  reference_proteome_short_name: SYNY3
+  taxon_id: NCBITaxon:1111708
 - common_name: thalassiosira
   organism: Thalassiosira pseudonana
   reference_proteome_short_name: THAPS
   taxon_id: NCBITaxon:35128
+- common_name: cacao
+  organism: Theobroma cacao
+  reference_proteome_short_name: THECC
+  taxon_id: NCBITaxon:3641
 - common_name: thermococcus
   organism: Thermococcus kodakaraensis
   reference_proteome_short_name: THEKO
@@ -383,14 +503,30 @@
   organism: Thermotoga maritima
   reference_proteome_short_name: THEMA
   taxon_id: NCBITaxon:243274
+- common_name: tribolium
+  organism: Tribolium castaneum
+  reference_proteome_short_name: TRICA
+  taxon_id: NCBITaxon:7070
 - common_name: trichomonas
   organism: Trichomonas vaginalis
   reference_proteome_short_name: TRIVA
   taxon_id: NCBITaxon:5722
+- common_name: trichoplax
+  organism: Trichoplax adhaerens
+  reference_proteome_short_name: TRIAD
+  taxon_id: NCBITaxon:10228
+- common_name: wheat
+  organism: Triticum aestivum
+  reference_proteome_short_name: WHEAT
+  taxon_id: NCBITaxon:4565
 - common_name: t_brucei
   organism: Trypanosoma brucei
   reference_proteome_short_name: TRYB2
   taxon_id: NCBITaxon:185431
+- common_name: ustilago
+  organism: Ustilago maydis
+  reference_proteome_short_name: USTMA
+  taxon_id: NCBITaxon:237631
 - common_name: cholera
   organism: Vibrio cholerae
   reference_proteome_short_name: VIBCH
@@ -407,126 +543,6 @@
   organism: Xenopus tropicalis
   reference_proteome_short_name: XENTR
   taxon_id: NCBITaxon:8364
-- common_name: maize
-  organism: Zea mays
-  reference_proteome_short_name: MAIZE
-  taxon_id: NCBITaxon:4577
-- common_name: Amborella
-  organism: Amborella trichopoda
-  reference_proteome_short_name: AMBTC
-  taxon_id: NCBITaxon:13333
-- common_name: cabbage
-  organism: Brassica rapa subsp. pekinensis
-  reference_proteome_short_name: BRARP
-  taxon_id: NCBITaxon:51351
-- common_name: orange
-  organism: Citrus sinensis
-  reference_proteome_short_name: CITSI
-  taxon_id: NCBITaxon:2711
-- common_name: cucumber
-  organism: Cucumis sativus
-  reference_proteome_short_name: CUCSA
-  taxon_id: NCBITaxon:3659
-- common_name: yellow monkey flower
-  organism: Erythranthe guttata
-  reference_proteome_short_name: ERYGU
-  taxon_id: NCBITaxon:4155
-- common_name: cotton
-  organism: Gossypium hirsutum
-  reference_proteome_short_name: GOSHI
-  taxon_id: NCBITaxon:3635
-- common_name: sunflower
-  organism: Helianthus annuus
-  reference_proteome_short_name: HELAN
-  taxon_id: NCBITaxon:4232
-- common_name: barley
-  organism: Hordeum vulgare subsp. vulgare
-  reference_proteome_short_name: HORVV
-  taxon_id: NCBITaxon:112509
-- common_name: barrel medic
-  organism: Medicago truncatula
-  reference_proteome_short_name: MEDTR
-  taxon_id: NCBITaxon:3880
-- common_name: banana
-  organism: Musa acuminata subsp. malaccensis
-  reference_proteome_short_name: MUSAM
-  taxon_id: NCBITaxon:214687
-- common_name: tobacco
-  organism: Nicotiana tabacum
-  reference_proteome_short_name: TOBAC
-  taxon_id: NCBITaxon:4097
-- common_name: peach
-  organism: Prunus persica
-  reference_proteome_short_name: PRUPE
-  taxon_id: NCBITaxon:3760
-- common_name: bean
-  organism: Ricinus communis
-  reference_proteome_short_name: RICCO
-  taxon_id: NCBITaxon:3988
-- common_name: millet
-  organism: Setaria italica
-  reference_proteome_short_name: SETIT
-  taxon_id: NCBITaxon:4555
-- common_name: cacao
-  organism: Theobroma cacao
-  reference_proteome_short_name: THECC
-  taxon_id: NCBITaxon:3641
-- common_name: wheat
-  organism: Triticum aestivum
-  reference_proteome_short_name: WHEAT
-  taxon_id: NCBITaxon:4565
-- common_name: eelgrass
-  organism: Zostera marina
-  reference_proteome_short_name: ZOSMR
-  taxon_id: NCBITaxon:29655
-- common_name: bell pepper
-  organism: Capsicum annuum
-  reference_proteome_short_name: CAPAN
-  taxon_id: NCBITaxon:4072
-- common_name: flooded gum
-  organism: Eucalyptus grandis
-  reference_proteome_short_name: EUCGR
-  taxon_id: NCBITaxon:71139
-- common_name: english walnut
-  organism: Juglans regia
-  reference_proteome_short_name: JUGRE
-  taxon_id: NCBITaxon:51240
-- common_name: garden lettuce
-  organism: Lactuca sativa
-  reference_proteome_short_name: LACSA
-  taxon_id: NCBITaxon:4236
-- common_name: cassava
-  organism: Manihot esculenta
-  reference_proteome_short_name: MANES
-  taxon_id: NCBITaxon:3983
-- common_name: sacred lotus
-  organism: Nelumbo nucifera
-  reference_proteome_short_name: NELNU
-  taxon_id: NCBITaxon:4432
-- common_name: spikemoss
-  organism: Selaginella moellendorffii
-  reference_proteome_short_name: SELML
-  taxon_id: NCBITaxon:88036
-- common_name: potato
-  organism: Solanum tuberosum
-  reference_proteome_short_name: SOLTU
-  taxon_id: NCBITaxon:4113
-- common_name: spinach
-  organism: Spinacia oleracea
-  reference_proteome_short_name: SPIOL
-  taxon_id: NCBITaxon:3562
-- common_name: green algae
-  organism: Klebsormidium nitens
-  reference_proteome_short_name: KLENI
-  taxon_id: NCBITaxon:105231
-- common_name: liverwort
-  organism: Marchantia polymorpha
-  reference_proteome_short_name: MARPO
-  taxon_id: NCBITaxon:3197
-- common_name: bacteroidetes
-  organism: Bacteroides thetaiotaomicron
-  reference_proteome_short_name: BACTN
-  taxon_id: NCBITaxon:226186
 - common_name: yarrowia
   organism: Yarrowia lipolytica
   reference_proteome_short_name: YARLI
@@ -535,40 +551,23 @@
   organism: Yersinia pestis
   reference_proteome_short_name: YERPE
   taxon_id: NCBITaxon:632
-- common_name: canola
-  organism: Brassica napus
-  reference_proteome_short_name: BRANA
-  taxon_id: NCBITaxon:3708
-- common_name: bradyrhizobium
-  organism: Bradyrhizobium diazoefficiens
-  reference_proteome_short_name: BRADU
-  taxon_id: NCBITaxon:224911
-- common_name: coxiella
-  organism: Coxiella burnetii
-  reference_proteome_short_name: COXBU
-  taxon_id: NCBITaxon:227377
-- common_name: korarchaeum
-  organism: Korarchaeum cryptofilum
-  reference_proteome_short_name: KORCO
-  taxon_id: NCBITaxon:374847
-- common_name: methanocaldococcus
-  organism: Methanocaldococcus jannaschii
-  reference_proteome_short_name: METJA
-  taxon_id: NCBITaxon:243232
-- common_name: methanosarcina
-  organism: Methanosarcina acetivorans
-  reference_proteome_short_name: METAC
-  taxon_id: NCBITaxon:188937
-- common_name: pyrobaculum
-  organism: Pyrobaculum aerophilum
-  reference_proteome_short_name: PYRAE
-  taxon_id: NCBITaxon:178306
-- common_name: ustilago
-  organism: Ustilago maydis
-  reference_proteome_short_name: USTMA
-  taxon_id: NCBITaxon:237631
-- common_name: s_japonicus
-  organism: Schizosaccharomyces japonicus
-  reference_proteome_short_name: SCHJY
-  taxon_id: NCBITaxon:402676
-
+- common_name: maize
+  organism: Zea mays
+  reference_proteome_short_name: MAIZE
+  taxon_id: NCBITaxon:4577
+- common_name: eelgrass
+  organism: Zostera marina
+  reference_proteome_short_name: ZOSMR
+  taxon_id: NCBITaxon:29655
+- common_name: helobdella
+  organism: helobdella robusta
+  reference_proteome_short_name: HELRO
+  taxon_id: NCBITaxon:6412
+- common_name: lepisosteudae
+  organism: lepisosteus oculatus
+  reference_proteome_short_name: LEPOC
+  taxon_id: NCBITaxon:7918
+- common_name: m_genitalium
+  organism: mycoplasma genitalium
+  reference_proteome_short_name: MYCGE
+  taxon_id: NCBITaxon:243273