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Add resistance determining regions to tb expert rules bed file as IGV track #348

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ryanjameskennedy opened this issue Sep 12, 2024 · 0 comments · Fixed by #366
Closed

Add resistance determining regions to tb expert rules bed file as IGV track #348

ryanjameskennedy opened this issue Sep 12, 2024 · 0 comments · Fixed by #366
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ryanjameskennedy commented Sep 12, 2024 •
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RRDR
cds location: 1520-1601
codon location: 507-533
NC_000962.3 position: 761325-761405

Here is a link to the rpoB gene

gyrA high-level MFX resistance

Should look something like this:

NC_000962.3	761325	761405	RRDR	rpob	rifampicin
NC_000962.3	7563	7565	MFX_gyrA88	gyrA	MFX
NC_000962.3	7581	7583	MFX_gyrA94	gyrA	MFX
NC_000962.3	4326003	4327472	LOF_ethA	ethA	ethionamide
NC_000962.3	4407527	4408201	LOF_gid	gid	streptomycin
@ryanjameskennedy ryanjameskennedy self-assigned this Sep 12, 2024
@ryanjameskennedy ryanjameskennedy changed the title Add RIF-resistance determining region to bed file as IGV track Add resistance determining regions to tb expert rules bed file as IGV track Sep 16, 2024
@ryanjameskennedy ryanjameskennedy added the high High priority label Sep 16, 2024
@ryanjameskennedy ryanjameskennedy linked a pull request Nov 6, 2024 that will close this issue
Add tb grading rules bed #366
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Add tb grading rules bed genomic-medicine-sweden/jasen
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