biomcp/.github/workflows/ci.yml at 577b1239ec1b64888685a38d8a3f3e4a77a7ac77 · genomoncology/biomcp · GitHub

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name: CI

on:
  pull_request:

jobs:
  check:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Cache protoc
        uses: actions/cache@v4
        with:
          path: ${{ runner.tool_cache }}/protoc
          key: protoc-${{ runner.os }}-${{ runner.arch }}-v28.3

      - uses: arduino/setup-protoc@v3
        continue-on-error: true
        with:
          version: "28.3"
          repo-token: ${{ secrets.GITHUB_TOKEN }}

      - uses: dtolnay/rust-toolchain@stable
        with:
          components: rustfmt, clippy

      - run: cargo fmt --check
      - run: cargo clippy -- -D warnings
      - run: cargo test

  version-sync:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - run: bash scripts/check-version-sync.sh

  climb-hygiene:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - run: bash scripts/check-no-climb-tracked.sh

  contracts:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Cache protoc
        uses: actions/cache@v4
        with:
          path: ${{ runner.tool_cache }}/protoc
          key: protoc-${{ runner.os }}-${{ runner.arch }}-v28.3

      - uses: arduino/setup-protoc@v3
        continue-on-error: true
        with:
          version: "28.3"
          repo-token: ${{ secrets.GITHUB_TOKEN }}

      - uses: dtolnay/rust-toolchain@stable

      - uses: actions/setup-python@v5
        with:
          python-version: "3.12"

      - uses: astral-sh/setup-uv@v4

      - run: cargo build --release --locked
      - run: uv sync --extra dev
      - run: uv run pytest tests/ -v --mcp-cmd "./target/release/biomcp serve"
      - run: uv run mkdocs build --strict

  # Stable PR-blocking executable spec gate. Volatile live-network headings
  # are excluded here and covered by spec-smoke.yml.
  spec-stable:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Cache protoc
        uses: actions/cache@v4
        with:
          path: ${{ runner.tool_cache }}/protoc
          key: protoc-${{ runner.os }}-${{ runner.arch }}-v28.3

      - uses: arduino/setup-protoc@v3
        continue-on-error: true
        with:
          version: "28.3"
          repo-token: ${{ secrets.GITHUB_TOKEN }}

      - uses: dtolnay/rust-toolchain@stable

      - uses: actions/setup-python@v5
        with:
          python-version: "3.12"

      - uses: astral-sh/setup-uv@v4

      # Build the release binary first so make spec exercises target/release/biomcp,
      # not a stale editable install from .venv/bin.
      - run: cargo build --release --locked
      - run: make spec-pr