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Documentation for using NEON container #3

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rbartelme opened this issue Feb 11, 2021 · 0 comments
Open
11 tasks

Documentation for using NEON container #3

rbartelme opened this issue Feb 11, 2021 · 0 comments

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@rbartelme
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Docker and R package documentation for the NEON microbiome group

Rough Draft of Pages

Logging on to CyVerse VICE:

  • logon to de2
  • location of the community data
  • executing the app
  • importing github repositories

Getting the data via:

  • NEON API
  • webhooks (wget/curl)
  • iRODS and data store
  • iRODS configuration

NEON workflow explanation

  • Need input from group on this

Output from analyses

  • tax tables
  • relative abundance counts
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@rbartelme