Sebastian mentioned they are not necessary anymore.
"paths": {
"@graphprotocol/hypergraph": ["./packages/hypergraph/src/index.js"],
"@graphprotocol/hypergraph/*": ["./packages/hypergraph/src/*.js"],
"@graphprotocol/hypergraph-react": ["./packages/hypergraph-react/src/index.js"],
"@graphprotocol/hypergraph-react/*": ["./packages/hypergraph-react/src/*.js"]
},