diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml index 2ceb62a..ac62f45 100644 --- a/.github/workflows/main.yaml +++ b/.github/workflows/main.yaml @@ -22,7 +22,7 @@ jobs: run: sudo apt update && sudo apt install -y python3 python3-pip python3-setuptools curl - name: Install Ansible - run: sudo pip3 install ansible==2.9.15 + run: sudo pip3 install ansible==8.7.0 - name: Create ansible.cfg with correct roles_path run: sudo printf '[defaults]\nroles_path=../' > ansible.cfg diff --git a/files/requirements.txt b/files/requirements.txt index 4eb1ce9..54ec3a1 100644 --- a/files/requirements.txt +++ b/files/requirements.txt @@ -1,216 +1,261 @@ -a2wsgi==1.10.4 ; python_version >= "3.8" and python_version < "3.13" -adal==1.2.7 ; python_version >= "3.8" and python_version < "3.13" -aiobotocore==2.13.0 ; python_version >= "3.8" and python_version < "3.13" -aiodataloader==0.4.0 ; python_version >= "3.8" and python_version < "3.13" -aiofiles==23.2.1 ; python_version >= "3.8" and python_version < "3.13" -aiohttp==3.9.5 ; python_version >= "3.8" and python_version < "3.13" -aioitertools==0.11.0 ; python_version >= "3.8" and python_version < "3.13" -aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.13" -alembic==1.13.1 ; python_version >= "3.8" and python_version < "3.13" -amqp==5.2.0 ; python_version >= "3.8" and python_version < "3.13" -aniso8601==9.0.1 ; python_version >= "3.8" and python_version < "3.13" -annotated-types==0.6.0 ; python_version >= "3.8" and python_version < "3.13" -anyio==4.3.0 ; python_version >= "3.8" and python_version < "3.13" -apispec==6.6.1 ; python_version >= "3.8" and python_version < "3.13" -appdirs==1.4.4 ; python_version >= "3.8" and python_version < "3.13" -arcp==0.2.1 ; python_version >= "3.8" and python_version < "3.13" -argcomplete==3.3.0 ; python_version >= "3.8" and python_version < "3.13" -async-timeout==4.0.3 ; python_version >= "3.8" and python_version < "3.11" -attmap==0.13.2 ; python_version >= "3.8" and python_version < "3.13" -attrs==23.2.0 ; python_version >= "3.8" and python_version < "3.13" -babel==2.15.0 ; python_version >= "3.8" and python_version < "3.13" -backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9" -backports-zoneinfo[tzdata]==0.2.1 ; python_version >= "3.8" and python_version < "3.9" -bagit-profile==1.3.1 ; python_version >= "3.8" and python_version < "3.13" -bagit==1.8.1 ; python_version >= "3.8" and python_version < "3.13" -bcrypt==4.1.3 ; python_version >= "3.8" and python_version < "3.13" -bdbag==1.7.3 ; python_version >= "3.8" and python_version < "3.13" -beaker==1.13.0 ; python_version >= "3.8" and python_version < "3.13" -billiard==4.2.0 ; python_version >= "3.8" and python_version < "3.13" -bioblend==1.3.0 ; python_version >= "3.8" and python_version < "3.13" -bleach==6.1.0 ; python_version >= "3.8" and python_version < "3.13" -boltons==24.0.0 ; python_version >= "3.8" and python_version < "3.13" -boto==2.49.0 ; python_version >= "3.8" and python_version < "3.13" -botocore==1.34.106 ; python_version >= "3.8" and python_version < "3.13" -bx-python==0.11.0 ; python_version >= "3.8" and python_version < "3.13" -cachecontrol[filecache]==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -celery==5.4.0 ; python_version >= "3.8" and python_version < "3.13" -certifi==2024.2.2 ; python_version >= "3.8" and python_version < "3.13" -cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13" -charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.13" -cheetah3==3.2.6.post1 ; python_version >= "3.8" and python_version < "3.13" -circus==0.18.0 ; python_version >= "3.8" and python_version < "3.13" -click-didyoumean==0.3.1 ; python_version >= "3.8" and python_version < "3.13" -click-plugins==1.1.1 ; python_version >= "3.8" and python_version < "3.13" -click-repl==0.3.0 ; python_version >= "3.8" and python_version < "3.13" -click==8.1.7 ; python_version >= "3.8" and python_version < "3.13" -cloudauthz==0.6.0 ; python_version >= "3.8" and python_version < "3.13" -cloudbridge==3.2.0 ; python_version >= "3.8" and python_version < "3.13" -colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.13" and platform_system == "Windows" -coloredlogs==15.0.1 ; python_version >= "3.8" and python_version < "3.13" -conda-package-streaming==0.9.0 ; python_version >= "3.8" and python_version < "3.13" -cryptography==42.0.7 ; python_version >= "3.8" and python_version < "3.13" -cwl-upgrader==1.2.11 ; python_version >= "3.8" and python_version < "3.13" -cwl-utils==0.33 ; python_version >= "3.8" and python_version < "3.13" -cwltool==3.1.20240508115724 ; python_version >= "3.8" and python_version < "3.13" -decorator==5.1.1 ; python_version >= "3.8" and python_version < "3.13" -defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.13" -deprecation==2.1.0 ; python_version >= "3.8" and python_version < "3.13" -dictobj==0.4 ; python_version >= "3.8" and python_version < "3.13" -dnspython==2.6.1 ; python_version >= "3.8" and python_version < "3.13" -docopt==0.6.2 ; python_version >= "3.8" and python_version < "3.13" -docutils==0.20.1 ; python_version >= "3.8" and python_version < "3.13" -dparse==0.6.3 ; python_version >= "3.8" and python_version < "3.13" -edam-ontology==1.25.2 ; python_version >= "3.8" and python_version < "3.13" -email-validator==2.1.1 ; python_version >= "3.8" and python_version < "3.13" -exceptiongroup==1.2.1 ; python_version >= "3.8" and python_version < "3.11" -fastapi-slim==0.111.0 ; python_version >= "3.8" and python_version < "3.13" -filelock==3.14.0 ; python_version >= "3.8" and python_version < "3.13" -frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.13" -fs==2.4.16 ; python_version >= "3.8" and python_version < "3.13" -fsspec==2024.5.0 ; python_version >= "3.8" and python_version < "3.13" -future==1.0.0 ; python_version >= "3.8" and python_version < "3.13" -galaxy-app==24.1.3 ; python_version >= "3.8" and python_version < "3.13" -galaxy-sequence-utils==1.1.5 ; python_version >= "3.8" and python_version < "3.13" -galaxy2cwl==0.1.4 ; python_version >= "3.8" and python_version < "3.13" -graphene-sqlalchemy==3.0.0rc1 ; python_version >= "3.8" and python_version < "3.13" -graphene==3.3 ; python_version >= "3.8" and python_version < "3.13" -graphql-core==3.2.3 ; python_version >= "3.8" and python_version < "3.13" -graphql-relay==3.2.0 ; python_version >= "3.8" and python_version < "3.13" -gravity==1.0.6 ; python_version >= "3.8" and python_version < "3.13" -greenlet==3.0.3 ; python_version >= "3.8" and python_version < "3.13" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") -gunicorn==22.0.0 ; python_version >= "3.8" and python_version < "3.13" -gxformat2==0.18.0 ; python_version >= "3.8" and python_version < "3.13" -h11==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -h5grove==2.2.0 ; python_version >= "3.8" and python_version < "3.13" -h5py==3.11.0 ; python_version >= "3.8" and python_version < "3.13" -humanfriendly==10.0 ; python_version >= "3.8" and python_version < "3.13" -idna==3.7 ; python_version >= "3.8" and python_version < "3.13" -importlib-metadata==7.1.0 ; python_version >= "3.8" and python_version < "3.13" -importlib-resources==6.4.0 ; python_version >= "3.8" and python_version < "3.9" -isa-rwval==0.10.10 ; python_version >= "3.8" and python_version < "3.13" -isal==1.6.1 ; python_version >= "3.8" and python_version < "3.13" -isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.13" -jinja2==3.1.4 ; python_version >= "3.8" and python_version < "3.13" -jmespath==1.0.1 ; python_version >= "3.8" and python_version < "3.13" -jsonref==1.1.0 ; python_version >= "3.8" and python_version < "3.13" -jsonschema-specifications==2023.12.1 ; python_version >= "3.8" and python_version < "3.13" -jsonschema==4.20.0 ; python_version >= "3.8" and python_version < "3.13" -kombu==5.3.7 ; python_version >= "3.8" and python_version < "3.13" -lagom==2.6.0 ; python_version >= "3.8" and python_version < "3.13" -lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.13" -mako==1.3.5 ; python_version >= "3.8" and python_version < "3.13" -markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.13" -markdown==3.6 ; python_version >= "3.8" and python_version < "3.13" -markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.13" -mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.13" -mercurial==6.7.3 ; python_version >= "3.8" and python_version < "3.13" -mistune==3.0.2 ; python_version >= "3.8" and python_version < "3.13" -mrcfile==1.5.0 ; python_version >= "3.8" and python_version < "3.13" -msal==1.28.0 ; python_version >= "3.8" and python_version < "3.13" -msgpack==1.0.8 ; python_version >= "3.8" and python_version < "3.13" -multidict==6.0.5 ; python_version >= "3.8" and python_version < "3.13" -mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" -networkx==2.5 ; python_version >= "3.8" and python_version < "3.13" -nodeenv==1.8.0 ; python_version >= "3.8" and python_version < "3.13" -numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9" -numpy==1.26.4 ; python_version >= "3.9" and python_version < "3.13" -oauthlib==3.2.2 ; python_version >= "3.8" and python_version < "3.13" -orjson==3.10.3 ; python_version >= "3.8" and python_version < "3.13" -oyaml==1.0 ; python_version >= "3.8" and python_version < "3.13" -packaging==24.0 ; python_version >= "3.8" and python_version < "3.13" -paramiko==3.4.0 ; python_version >= "3.8" and python_version < "3.13" -parsley==1.3 ; python_version >= "3.8" and python_version < "3.13" -paste==3.10.1 ; python_version >= "3.8" and python_version < "3.13" -pastedeploy==3.1.0 ; python_version >= "3.8" and python_version < "3.13" -pebble==5.0.7 ; python_version >= "3.8" and python_version < "3.13" -pillow==10.3.0 ; python_version >= "3.8" and python_version < "3.13" -promise==2.3 ; python_version >= "3.8" and python_version < "3.13" -prompt-toolkit==3.0.43 ; python_version >= "3.8" and python_version < "3.13" -prov==1.5.1 ; python_version >= "3.8" and python_version < "3.13" -psutil==5.9.8 ; python_version >= "3.8" and python_version < "3.13" -pulsar-galaxy-lib==0.15.6 ; python_version >= "3.8" and python_version < "3.13" -pycparser==2.22 ; python_version >= "3.8" and python_version < "3.13" -pycryptodome==3.20.0 ; python_version >= "3.8" and python_version < "3.13" -pydantic-core==2.18.4 ; python_version >= "3.8" and python_version < "3.13" -pydantic-tes==0.1.5 ; python_version >= "3.8" and python_version < "3.13" -pydantic==2.7.4 ; python_version >= "3.8" and python_version < "3.13" -pydantic[email]==2.7.4 ; python_version >= "3.8" and python_version < "3.13" -pydot==2.0.0 ; python_version >= "3.8" and python_version < "3.13" -pyeventsystem==0.1.0 ; python_version >= "3.8" and python_version < "3.13" -pyfaidx==0.8.1.1 ; python_version >= "3.8" and python_version < "3.13" -pygments==2.18.0 ; python_version >= "3.8" and python_version < "3.13" -pyjwt==2.8.0 ; python_version >= "3.8" and python_version < "3.13" -pyjwt[crypto]==2.8.0 ; python_version >= "3.8" and python_version < "3.13" -pykwalify==1.8.0 ; python_version >= "3.8" and python_version < "3.13" -pylibmagic==0.5.0 ; python_version >= "3.8" and python_version < "3.13" -pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.13" -pyparsing==3.1.2 ; python_version >= "3.8" and python_version < "3.13" -pyreadline3==3.4.1 ; sys_platform == "win32" and python_version >= "3.8" and python_version < "3.13" -pysam==0.22.1 ; python_version >= "3.8" and python_version < "3.13" -python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.13" -python-magic==0.4.27 ; python_version >= "3.8" and python_version < "3.13" -python-multipart==0.0.9 ; python_version >= "3.8" and python_version < "3.13" -python3-openid==3.2.0 ; python_version >= "3.8" and python_version < "3.13" -pytz==2024.1 ; python_version >= "3.8" and python_version < "3.13" -pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.13" -pyzmq==26.0.3 ; python_version >= "3.8" and python_version < "3.13" -rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.13" -referencing==0.35.1 ; python_version >= "3.8" and python_version < "3.13" -refgenconf==0.12.2 ; python_version >= "3.8" and python_version < "3.13" -regex==2024.5.15 ; python_version >= "3.8" and python_version < "3.13" -repoze-lru==0.7 ; python_version >= "3.8" and python_version < "3.13" -requests-oauthlib==2.0.0 ; python_version >= "3.8" and python_version < "3.13" -requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.13" -requests-unixsocket==0.3.0 ; python_version >= "3.8" and python_version < "3.13" -requests==2.31.0 ; python_version >= "3.8" and python_version < "3.13" -rich==13.7.1 ; python_version >= "3.8" and python_version < "3.13" -rocrate==0.10.0 ; python_version >= "3.8" and python_version < "3.13" -routes==2.5.1 ; python_version >= "3.8" and python_version < "3.13" -rpds-py==0.18.1 ; python_version >= "3.8" and python_version < "3.13" -ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.13" and python_version >= "3.8" -ruamel-yaml==0.18.6 ; python_version >= "3.8" and python_version < "3.13" -s3fs==2024.5.0 ; python_version >= "3.8" and python_version < "3.13" -schema-salad==8.5.20240503091721 ; python_version >= "3.8" and python_version < "3.13" -setuptools-scm==5.0.2 ; python_version >= "3.8" and python_version < "3.13" -setuptools==69.5.1 ; python_version >= "3.8" and python_version < "3.13" -shellescape==3.8.1 ; python_version >= "3.8" and python_version < "3.13" -six==1.16.0 ; python_version >= "3.8" and python_version < "3.13" -sniffio==1.3.1 ; python_version >= "3.8" and python_version < "3.13" -social-auth-core==4.0.3 ; python_version >= "3.8" and python_version < "3.13" -sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.13" -spython==0.3.13 ; python_version >= "3.8" and python_version < "3.13" -sqlalchemy==2.0.30 ; python_version >= "3.8" and python_version < "3.13" -sqlitedict==2.1.0 ; python_version >= "3.8" and python_version < "3.13" -sqlparse==0.5.0 ; python_version >= "3.8" and python_version < "3.13" -starlette-context==0.3.6 ; python_version >= "3.8" and python_version < "3.13" -starlette-graphene3==0.6.0 ; python_version >= "3.8" and python_version < "3.13" -starlette==0.37.2 ; python_version >= "3.8" and python_version < "3.13" -supervisor==4.2.5 ; python_version >= "3.8" and python_version < "3.13" -svgwrite==1.4.3 ; python_version >= "3.8" and python_version < "3.13" -tenacity==8.3.0 ; python_version >= "3.8" and python_version < "3.13" -tifffile==2023.7.10 ; python_version >= "3.8" and python_version < "3.13" -tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.13" -tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11" -tornado==6.4 ; python_version >= "3.8" and python_version < "3.13" -tqdm==4.66.4 ; python_version >= "3.8" and python_version < "3.13" -tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.13" -tuswsgi==0.5.5 ; python_version >= "3.8" and python_version < "3.13" -typing-extensions==4.11.0 ; python_version >= "3.8" and python_version < "3.13" -tzdata==2024.1 ; python_version >= "3.8" and python_version < "3.13" -tzlocal==5.2 ; python_version >= "3.8" and python_version < "3.13" -ubiquerg==0.8.0 ; python_version >= "3.8" and python_version < "3.13" -urllib3==1.26.18 ; python_version >= "3.8" and python_version < "3.13" -uvicorn==0.29.0 ; python_version >= "3.8" and python_version < "3.13" -uvloop==0.19.0 ; python_version >= "3.8" and python_version < "3.13" -vine==5.1.0 ; python_version >= "3.8" and python_version < "3.13" -wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "3.13" -webencodings==0.5.1 ; python_version >= "3.8" and python_version < "3.13" -webob==1.8.7 ; python_version >= "3.8" and python_version < "3.13" -whoosh==2.7.4 ; python_version >= "3.8" and python_version < "3.13" -wrapt==1.16.0 ; python_version >= "3.8" and python_version < "3.13" -yacman==0.9.3 ; python_version >= "3.8" and python_version < "3.13" -yarl==1.9.4 ; python_version >= "3.8" and python_version < "3.13" -zipp==3.18.2 ; python_version >= "3.8" and python_version < "3.13" -zipstream-new==1.1.8 ; python_version >= "3.8" and python_version < "3.13" -zstandard==0.22.0 ; python_version >= "3.8" and python_version < "3.13" \ No newline at end of file +# https://raw.githubusercontent.com/galaxyproject/galaxy/abcb4550dbf55487dc911820344febd7a35925c6/lib/galaxy/dependencies/pinned-requirements.txt +a2wsgi==1.10.8 +adal==1.2.7 +aiobotocore==2.20.0 +aiodataloader==0.4.2 +aiofiles==24.1.0 +aiohappyeyeballs==2.4.4 ; python_full_version < '3.9' +aiohappyeyeballs==2.4.6 ; python_full_version >= '3.9' +aiohttp==3.10.11 ; python_full_version < '3.9' +aiohttp==3.11.12 ; python_full_version >= '3.9' +aioitertools==0.12.0 +aiosignal==1.3.1 ; python_full_version < '3.9' +aiosignal==1.3.2 ; python_full_version >= '3.9' +alembic==1.14.1 +amqp==5.3.1 +annotated-types==0.7.0 +anyio==4.5.2 ; python_full_version < '3.9' +anyio==4.8.0 ; python_full_version >= '3.9' +apispec==6.6.1 ; python_full_version < '3.9' +apispec==6.8.1 ; python_full_version >= '3.9' +appdirs==1.4.4 +arcp==0.2.1 +argcomplete==3.5.3 +async-timeout==5.0.1 ; python_full_version < '3.11' +attmap==0.13.2 +attrs==25.1.0 +babel==2.17.0 +backports-zoneinfo==0.2.1 ; python_full_version < '3.9' +bagit==1.8.1 +bagit-profile==1.3.1 +bcrypt==4.2.1 +bdbag==1.7.3 +beaker==1.13.0 +billiard==4.2.1 +bioblend==1.4.0 +bleach==6.1.0 ; python_full_version < '3.9' +bleach==6.2.0 ; python_full_version >= '3.9' +boltons==25.0.0 +boto==2.49.0 +botocore==1.36.23 +bx-python==0.13.0 +cachecontrol==0.14.2 +celery==5.4.0 +certifi==2025.1.31 +cffi==1.17.1 +charset-normalizer==3.4.1 +circus==0.19.0 +click==8.1.8 +click-didyoumean==0.3.1 +click-plugins==1.1.1 +click-repl==0.3.0 +cloudauthz==0.6.0 +cloudbridge==3.2.0 +colorama==0.4.6 ; sys_platform == 'win32' +coloredlogs==15.0.1 +conda-package-streaming==0.11.0 +cryptography==44.0.1 +ct3==3.4.0 +cwl-upgrader==1.2.11 ; python_full_version < '3.9' +cwl-upgrader==1.2.12 ; python_full_version >= '3.9' +cwl-utils==0.35 ; python_full_version < '3.9' +cwl-utils==0.37 ; python_full_version >= '3.9' +cwltool==3.1.20241007082533 ; python_full_version < '3.9' +cwltool==3.1.20250110105449 ; python_full_version >= '3.9' +defusedxml==0.7.1 +deprecation==2.1.0 +dictobj==0.4 +dnspython==2.6.1 ; python_full_version < '3.9' +dnspython==2.7.0 ; python_full_version >= '3.9' +docopt==0.6.2 +docutils==0.20.1 ; python_full_version < '3.9' +docutils==0.21.2 ; python_full_version >= '3.9' +dparse==0.6.4 +edam-ontology==1.25.2 +email-validator==2.2.0 +exceptiongroup==1.2.2 ; python_full_version < '3.11' +fastapi-slim==0.115.8 +filelock==3.16.1 ; python_full_version < '3.9' +filelock==3.17.0 ; python_full_version >= '3.9' +fissix==24.4.24 ; python_full_version >= '3.13' +frozenlist==1.5.0 +fs==2.4.16 +fsspec==2024.10.0 ; python_full_version < '3.9' +fsspec==2025.2.0 ; python_full_version >= '3.9' +future==1.0.0 +galaxy2cwl==0.1.4 ; python_full_version < '3.9' +graphene==3.4.3 +graphene-sqlalchemy==3.0.0rc2 +graphql-core==3.2.6 +graphql-relay==3.2.0 +gravity==1.0.7 +greenlet==3.1.1 ; (python_full_version < '3.14' and platform_machine == 'AMD64') or (python_full_version < '3.14' and platform_machine == 'WIN32') or (python_full_version < '3.14' and platform_machine == 'aarch64') or (python_full_version < '3.14' and platform_machine == 'amd64') or (python_full_version < '3.14' and platform_machine == 'ppc64le') or (python_full_version < '3.14' and platform_machine == 'win32') or (python_full_version < '3.14' and platform_machine == 'x86_64') +gunicorn==23.0.0 +gxformat2==0.20.0 +h11==0.14.0 +h5grove==2.3.0 +h5py==3.11.0 ; python_full_version < '3.9' +h5py==3.13.0 ; python_full_version >= '3.9' +humanfriendly==10.0 +idna==3.10 +importlib-metadata==8.5.0 ; python_full_version < '3.9' +importlib-metadata==8.6.1 ; python_full_version >= '3.9' +importlib-resources==6.4.5 ; python_full_version < '3.9' +importlib-resources==6.5.2 ; python_full_version >= '3.9' and python_full_version < '3.12' +isa-rwval @ git+https://github.com/nsoranzo/isa-rwval.git@3d989181058d2765a93cb0e7ca85d6955e0eb6ef +isal==1.7.1 +isodate==0.6.1 ; python_full_version < '3.9' +isodate==0.7.2 ; python_full_version >= '3.9' and python_full_version < '3.11' +jinja2==3.1.5 +jmespath==1.0.1 +jsonref==1.1.0 +jsonschema==4.23.0 +jsonschema-specifications==2023.12.1 ; python_full_version < '3.9' +jsonschema-specifications==2024.10.1 ; python_full_version >= '3.9' +kombu==5.4.2 +lagom==2.7.5 +legacy-cgi==2.6.2 ; python_full_version >= '3.13' +lxml==5.3.1 +mako==1.3.9 +markdown==3.7 +markdown-it-py==3.0.0 +markupsafe==2.1.5 ; python_full_version < '3.9' +markupsafe==3.0.2 ; python_full_version >= '3.9' +mdurl==0.1.2 +mercurial==6.9.2 +mistune==3.0.2 +mrcfile==1.5.4 +msal==1.31.1 +msgpack==1.1.0 +multidict==6.1.0 +mypy-extensions==1.0.0 +networkx==3.1 ; python_full_version < '3.9' +networkx==3.2.1 ; python_full_version == '3.9.*' +networkx==3.4.2 ; python_full_version >= '3.10' +nodeenv==1.9.1 +numpy==1.24.4 ; python_full_version < '3.9' +numpy==2.0.2 ; python_full_version == '3.9.*' +numpy==2.2.3 ; python_full_version >= '3.10' +oauthlib==3.2.2 +orjson==3.10.15 +oyaml==1.0 +packaging==24.2 +paramiko==3.5.1 +parsley==1.3 +paste==3.10.1 +pastedeploy==3.1.0 +pebble==5.1.0 +pillow==10.4.0 ; python_full_version < '3.9' +pillow==11.1.0 ; python_full_version >= '3.9' +pkgutil-resolve-name==1.3.10 ; python_full_version < '3.9' +promise==2.3 +prompt-toolkit==3.0.50 +propcache==0.2.0 ; python_full_version < '3.9' +propcache==0.3.0 ; python_full_version >= '3.9' +prov==1.5.1 +psutil==7.0.0 +pulsar-galaxy-lib==0.15.6 +pycparser==2.22 +pycryptodome==3.21.0 +pydantic==2.10.6 +pydantic-core==2.27.2 +pydantic-tes==0.1.5 +pydot==2.0.0 +pyeventsystem==0.1.0 +pyfaidx==0.8.1.3 +pygments==2.19.1 +pyjwt==2.9.0 ; python_full_version < '3.9' +pyjwt==2.10.1 ; python_full_version >= '3.9' +pykwalify==1.8.0 +pylibmagic==0.5.0 +pynacl==1.5.0 +pyparsing==3.1.4 ; python_full_version < '3.9' +pyparsing==3.2.1 ; python_full_version >= '3.9' +pyreadline3==3.5.4 ; sys_platform == 'win32' +pysam==0.23.0 +python-dateutil==2.9.0.post0 +python-magic==0.4.27 +python-multipart==0.0.20 +python-slugify==8.0.4 +python3-openid==3.2.0 +pytz==2025.1 +pyyaml==6.0.2 +pyzmq==26.2.1 +rdflib==6.3.2 ; python_full_version < '3.8.1' +rdflib==7.0.0 ; python_full_version >= '3.8.1' and python_full_version < '3.9' +rdflib==7.1.3 ; python_full_version >= '3.9' +referencing==0.35.1 ; python_full_version < '3.9' +referencing==0.36.2 ; python_full_version >= '3.9' +refgenconf==0.12.2 +regex==2024.11.6 +repoze-lru==0.7 +requests==2.32.3 +requests-oauthlib==2.0.0 +requests-toolbelt==1.0.0 +requests-unixsocket==0.3.0 +rich==13.9.4 +rich-argparse==1.7.0 ; python_full_version >= '3.9' +rocrate==0.11.0 ; python_full_version < '3.9' +rocrate==0.13.0 ; python_full_version >= '3.9' +routes==2.5.1 +rpds-py==0.20.1 ; python_full_version < '3.9' +rpds-py==0.23.1 ; python_full_version >= '3.9' +ruamel-yaml==0.18.10 +ruamel-yaml-clib==0.2.8 ; python_full_version < '3.9' and platform_python_implementation == 'CPython' +ruamel-yaml-clib==0.2.12 ; python_full_version >= '3.9' and python_full_version < '3.13' and platform_python_implementation == 'CPython' +s3fs==2024.10.0 ; python_full_version < '3.9' +s3fs==2025.2.0 ; python_full_version >= '3.9' +schema-salad==8.7.20241010092723 ; python_full_version < '3.9' +schema-salad==8.8.20250205075315 ; python_full_version >= '3.9' +setuptools==75.3.0 ; python_full_version < '3.9' +setuptools==75.8.0 ; python_full_version >= '3.9' +setuptools-scm==5.0.2 +six==1.17.0 +sniffio==1.3.1 +social-auth-core==4.5.4 ; python_full_version < '3.9' +social-auth-core==4.5.6 ; python_full_version >= '3.9' +sortedcontainers==2.4.0 +spython==0.3.14 +sqlalchemy==2.0.38 +sqlitedict==2.1.0 +sqlparse==0.5.3 +starlette==0.44.0 ; python_full_version < '3.9' +starlette==0.45.3 ; python_full_version >= '3.9' +starlette-context==0.3.6 +starlette-graphene3==0.6.0 +supervisor==4.2.5 +svgwrite==1.4.3 +tenacity==9.0.0 +text-unidecode==1.3 +tifffile==2023.7.10 ; python_full_version < '3.9' +tifffile==2024.8.30 ; python_full_version == '3.9.*' +tifffile==2025.2.18 ; python_full_version >= '3.10' +tinydb==4.8.2 +tomli==2.2.1 ; python_full_version < '3.11' +tornado==6.4.2 +tqdm==4.67.1 +tuspy==1.1.0 +tuswsgi==0.5.5 +typing-extensions==4.12.2 +tzdata==2025.1 +tzlocal==5.2 ; python_full_version < '3.9' +tzlocal==5.3 ; python_full_version >= '3.9' +ubiquerg==0.8.0 +urllib3==1.26.20 ; python_full_version < '3.10' +urllib3==2.3.0 ; python_full_version >= '3.10' +uvicorn==0.33.0 ; python_full_version < '3.9' +uvicorn==0.34.0 ; python_full_version >= '3.9' +uvloop==0.21.0 +vine==5.1.0 +wcwidth==0.2.13 +webencodings==0.5.1 +webob==1.8.9 +whoosh==2.7.4 +wrapt==1.17.2 +yacman==0.9.3 +yarl==1.15.2 ; python_full_version < '3.9' +yarl==1.18.3 ; python_full_version >= '3.9' +zipp==3.20.2 ; python_full_version < '3.9' +zipp==3.21.0 ; python_full_version >= '3.9' +zipstream-new==1.1.8 +zstandard==0.23.0 \ No newline at end of file diff --git a/tasks/slurm.yml b/tasks/slurm.yml index a2a06a1..7382e8f 100644 --- a/tasks/slurm.yml +++ b/tasks/slurm.yml @@ -39,7 +39,7 @@ when: ansible_os_family == "Debian" - name: Copy Galaxy pip Requirements - #get_url: url=https://raw.githubusercontent.com/galaxyproject/galaxy/refs/tags/v24.1/lib/galaxy/dependencies/pinned-requirements.txt dest=/tmp/requirements.txt + #get_url: url=https://raw.githubusercontent.com/galaxyproject/galaxy/refs/tags/v24.2.0/lib/galaxy/dependencies/pinned-requirements.txt dest=/tmp/requirements.txt copy: src=requirements.txt dest=/tmp/requirements.txt - name: Pin setuptools version to 69.5.1