fix: requirements.txt to reduce vulnerabilities

The following vulnerabilities are fixed by pinning transitive dependencies:
- https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321964
- https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321966
- https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321969
- https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321970
- https://snyk.io/vuln/SNYK-PYTHON-SETUPTOOLS-3180412
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3372984
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3372987
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3372990
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3372993
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3372996
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3372999
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373002
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373005
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373008
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373011
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373014
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373017
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373020
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373023
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373026
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373029
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373032
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373035
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373038
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-3373041
- https://snyk.io/vuln/SNYK-PYTHON-TENSORFLOW-5291376
- https://snyk.io/vuln/SNYK-PYTHON-WERKZEUG-6035177
- https://snyk.io/vuln/SNYK-PYTHON-WHEEL-3180413

requirements.txt

@@ -4,7 +4,7 @@ intervaltree
 luigi
 more-itertools
 # for tf 2.6.0
-numpy==1.19.2
+numpy==1.22.2
 pandas
 pre-commit
 pynvml
@@ -16,7 +16,7 @@ python-slugify
 sed_eval
 soundfile
 spotty
-tensorflow>=2.0
+tensorflow>=2.11.1
 torch
 torchinfo
 tqdm
@@ -25,3 +25,6 @@ tqdm
 numba==0.48
 #numba>=0.49.0 # not directly required, pinned by Snyk to avoid a vulnerability
 scikit-learn>=0.24.2 # not directly required, pinned by Snyk to avoid a vulnerability
+setuptools>=65.5.1 # not directly required, pinned by Snyk to avoid a vulnerability
+werkzeug>=2.3.8 # not directly required, pinned by Snyk to avoid a vulnerability
+wheel>=0.38.0 # not directly required, pinned by Snyk to avoid a vulnerability