From 994a68bce59b3abdc2e3ed5a02d13c94bd41cbe0 Mon Sep 17 00:00:00 2001
From: Trevor Manz <trevor.j.manz@gmail.com>
Date: Wed, 15 Mar 2023 13:53:34 -0400
Subject: [PATCH] chore: move notebooks/ -> examples/ for better gitattributes
 (#116)

---
 README.md                                     | 2 +-
 {notebooks => examples}/Examples.ipynb        | 9 +--------
 {notebooks => examples}/Fuse.ipynb            | 9 +--------
 {notebooks => examples}/Plugin.ipynb          | 9 +--------
 {notebooks => examples}/View_Projection.ipynb | 9 +--------
 5 files changed, 5 insertions(+), 33 deletions(-)
 rename {notebooks => examples}/Examples.ipynb (97%)
 rename {notebooks => examples}/Fuse.ipynb (99%)
 rename {notebooks => examples}/Plugin.ipynb (98%)
 rename {notebooks => examples}/View_Projection.ipynb (81%)

diff --git a/README.md b/README.md
index 5a7a5eb..c88c2c9 100644
--- a/README.md
+++ b/README.md
@@ -5,7 +5,7 @@ on top of [`higlass-schema`](https://github.com/higlass/higlass-schema) and
 [`higlass-widget`](https://github.com/higlass/higlass-widget).
 
 [![License](https://img.shields.io/pypi/l/higlass-python.svg?color=green)](https://github.com/higlass/higlass-python/raw/main/LICENSE)
-[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/higlass/higlass-python/blob/main/notebooks/Examples.ipynb)
+[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/higlass/higlass-python/blob/main/examples/Examples.ipynb)
 
 ## Usage
 
diff --git a/notebooks/Examples.ipynb b/examples/Examples.ipynb
similarity index 97%
rename from notebooks/Examples.ipynb
rename to examples/Examples.ipynb
index 41d131f..933281d 100644
--- a/notebooks/Examples.ipynb
+++ b/examples/Examples.ipynb
@@ -16,14 +16,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import os\n",
-    "import sys\n",
-    "\n",
-    "# Install if in Google colab notebook\n",
-    "if \"google.colab\" in sys.modules:\n",
-    "    os.system(\n",
-    "        \"python -m pip install --upgrade --force-reinstall git+https://github.com/higlass/higlass-python\"\n",
-    "    )"
+    "pip install --pre higlass-python\n"
    ]
   },
   {
diff --git a/notebooks/Fuse.ipynb b/examples/Fuse.ipynb
similarity index 99%
rename from notebooks/Fuse.ipynb
rename to examples/Fuse.ipynb
index dc81767..21d4e66 100644
--- a/notebooks/Fuse.ipynb
+++ b/examples/Fuse.ipynb
@@ -19,14 +19,7 @@
    },
    "outputs": [],
    "source": [
-    "import os\n",
-    "import sys\n",
-    "\n",
-    "# Install if in Google colab notebook\n",
-    "if \"google.colab\" in sys.modules:\n",
-    "    os.system(\n",
-    "        \"python -m pip install --upgrade --force-reinstall git+https://github.com/higlass/higlass-python\"\n",
-    "    )"
+    "pip install --pre higlass-python\n"
    ]
   },
   {
diff --git a/notebooks/Plugin.ipynb b/examples/Plugin.ipynb
similarity index 98%
rename from notebooks/Plugin.ipynb
rename to examples/Plugin.ipynb
index 58b8c2d..db942a7 100644
--- a/notebooks/Plugin.ipynb
+++ b/examples/Plugin.ipynb
@@ -7,14 +7,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import os\n",
-    "import sys\n",
-    "\n",
-    "# Install if in Google colab notebook\n",
-    "if \"google.colab\" in sys.modules:\n",
-    "    os.system(\n",
-    "        \"python -m pip install --upgrade --force-reinstall git+https://github.com/higlass/higlass-python\"\n",
-    "    )"
+    "pip install --pre higlass-python\n"
    ]
   },
   {
diff --git a/notebooks/View_Projection.ipynb b/examples/View_Projection.ipynb
similarity index 81%
rename from notebooks/View_Projection.ipynb
rename to examples/View_Projection.ipynb
index 66cf5a6..5e72eb3 100644
--- a/notebooks/View_Projection.ipynb
+++ b/examples/View_Projection.ipynb
@@ -7,14 +7,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import os\n",
-    "import sys\n",
-    "\n",
-    "# Install if in Google colab notebook\n",
-    "if \"google.colab\" in sys.modules:\n",
-    "    os.system(\n",
-    "        \"python -m pip install --upgrade --force-reinstall git+https://github.com/higlass/higlass-python\"\n",
-    "    )"
+    "pip install --pre higlass-python\n"
    ]
   },
   {