From cbdade5f0540a8aa8a1c8fa6e511a9e4119ec1be Mon Sep 17 00:00:00 2001
From: Philip Tzou <philip.npc@gmail.com>
Date: Mon, 7 Feb 2022 17:49:07 -0800
Subject: [PATCH] total and count of invivo_selection_results should by default
 be 1; fix #22

---
 derived_tables/03_invivo_selection_results.sql | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/derived_tables/03_invivo_selection_results.sql b/derived_tables/03_invivo_selection_results.sql
index f76f9a3..3f428ca 100644
--- a/derived_tables/03_invivo_selection_results.sql
+++ b/derived_tables/03_invivo_selection_results.sql
@@ -19,8 +19,8 @@ INSERT INTO invivo_selection_results
     IM.gene,
     IM.position,
     IM.amino_acid,
-    CASE WHEN IM.count IS NULL THEN 0 ELSE IM.count END,
-    CASE WHEN IM.total IS NULL THEN 0 ELSE IM.total END,
+    CASE WHEN IM.count IS NULL THEN 1 ELSE IM.count END,
+    CASE WHEN IM.total IS NULL THEN 1 ELSE IM.total END,
     PTH_INF.event_date AS infection_date,
     PTH.event_date AS appearance_date,
     PTH_INF.severity AS severity