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Consensus of WHO variants #18

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philiptzou opened this issue Jan 23, 2022 · 0 comments

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philiptzou commented Jan 23, 2022 •

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The make sync-varcons command should be updated to retrieve WHO variants based on Outbreak.Info's curated_lineages list:

https://github.com/outbreak-info/outbreak.info/blob/5fda2ea4e697fd08d3a79acf4e239b16637e6058/curated_reports_prep/curated_lineages.yaml

https://github.com/outbreak-info/outbreak.info/blob/5fda2ea4e697fd08d3a79acf4e239b16637e6058/web/src/assets/genomics/curated_lineages.json

Also should we maintain a similar list in our database too?

Outbreak.Info also maintained a table of all lineages and their descendants: https://raw.githubusercontent.com/cov-lineages/lineages-website/master/data/lineages.yml

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philiptzou self-assigned this

philiptzou added the enhancement label

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