adds markdown+html formating

Author: Czarnewski

labs/FAQ.md

@@ -19,71 +19,71 @@ Below you can find some common error and problems you might face either during i
 
 
 <details>
-<summary><b>Command line developer tools not found (OSX)</b></summary>
-<p>
+  <summary><b>Command line developer tools not found (OSX)</b></summary>
+  <p>
 
-If you don't yet have Mac OSX command line developer tools, please install it using:
+  If you don't yet have Mac OSX command line developer tools, please install it using:
 
-```
-xcode-select --install
-```
+  ```
+  xcode-select --install
+  ```
 
-</p>
+  </p>
 </details>
 
 <br/>
 
 
 <details>
-<summary><b>Error - umap-learn not found</b></summary>
-<p>
+  <summary><b>Error - umap-learn not found</b></summary>
+  <p>
 
-If your R does not find the correct python version, it will complain that `umap-learn` is not installed and ask you to install it. Here are some tips on how to find the correct python version that was installed in the conda environment.
+  If your R does not find the correct python version, it will complain that `umap-learn` is not installed and ask you to install it. Here are some tips on how to find the correct python version that was installed in the conda environment.
 
-<br/>
+  <br/>
 
-**Try selecting the correct conda env in R**
+  **Try selecting the correct conda env in R**
 
-In this example the conda environment is named `scRNAseq2021`.
-```
-library(reticulate)
-reticulate::use_conda("scRNAseq2021")
-```
+  In this example the conda environment is named `scRNAseq2021`.
+  ```
+  library(reticulate)
+  reticulate::use_conda("scRNAseq2021")
+  ```
 
-Then check what python you have in R:
-```
-reticulate::py_config()
-# should read at top:
-python:         /Users/asbj/miniconda3/envs/scRNAseq2021/bin/python
-```
+  Then check what python you have in R:
+  ```
+  reticulate::py_config()
+  # should read at top:
+  python:         /Users/asbj/miniconda3/envs/scRNAseq2021/bin/python
+  ```
 
-If that still is not right, you may have an `r-reticulate` python installation as well and need to perform the steps below.
+  If that still is not right, you may have an `r-reticulate` python installation as well and need to perform the steps below.
 
-<br/>
+  <br/>
 
-**Restart R and select python version**
+  **Restart R and select python version**
 
-OBS! Before doing anything else you need to select python version.
+  OBS! Before doing anything else you need to select python version.
 
-First, find out what path you have to your conda python (in TERMINAL):
-```
-which python
-/Users/asbj/miniconda3/envs/scRNAseq2021/bin/python
-```
+  First, find out what path you have to your conda python (in TERMINAL):
+  ```
+  which python
+  /Users/asbj/miniconda3/envs/scRNAseq2021/bin/python
+  ```
 
-Then in R (after restarting):
-```
-reticulate::use_python("/Users/asbj/miniconda3/envs/scRNAseq2021/bin/python", required=T)
-```
+  Then in R (after restarting):
+  ```
+  reticulate::use_python("/Users/asbj/miniconda3/envs/scRNAseq2021/bin/python", required=T)
+  ```
 
-Then check again with `py_config` if correct version of python is used:
-```
-reticulate::py_config()
-```
+  Then check again with `py_config` if correct version of python is used:
+  ```
+  reticulate::py_config()
+  ```
 
-If you have the correct version now, you should be able to run UMAP without issues.
+  If you have the correct version now, you should be able to run UMAP without issues.
 
-</p>
+  </p>
 </details>
 
 <br/>