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Testing masking sites #40

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hsmaan opened this issue Apr 18, 2021 · 0 comments

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hsmaan commented Apr 18, 2021

Processing of sequences with current alignment + masking scripts, if sequences < 29903, leads to gapped reference in final alignment, and masking after the fact might hit wrong positions
Test if this can happen with sequences >29903 in current version of script, and add masking before alignment if necessary

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