formatting

Author: tpietzsch

src/main/java/net/imglib2/KDTree.java

@@ -44,7 +44,7 @@ public KDTreeImpl impl()
 	 */
 	public < L extends RealLocalizable > KDTree( final List< T > values, final List< L > positions )
 	{
-		this( verifySize(values, positions), values, positions );
+		this( verifySize( values, positions ), values, positions );
 	}
 
 	private static int verifySize( final List< ? > values, final List< ? > positions )
@@ -61,7 +61,7 @@ private static int verifySize( final List< ? > values, final List< ? > positions
 	 * {@link IterableRealInterval}.
 	 *
 	 * @param interval
-	 *            elements in the tree are obtained by iterating this
+	 * 		elements in the tree are obtained by iterating this
 	 */
 	public KDTree( final IterableRealInterval< T > interval )
 	{
@@ -129,16 +129,15 @@ public < L extends RealLocalizable > KDTree( final int numPoints, final Iterable
 	public KDTree( final KDTreeData< T > data )
 	{
 		treeData = data;
-		impl = new KDTreeImpl(treeData.positions);
+		impl = new KDTreeImpl( treeData.positions() );
 	}
 
 	/**
 	 * Get the root node.
 	 *
 	 * @return the root node.
 	 *
-	 * @deprecated
-	 * {@link KDTreeNode} is now a re-usable proxy (like {@code NativeType}).
+	 * @deprecated {@link KDTreeNode} is now a re-usable proxy (like {@code NativeType}).
 	 * To work with existing code, {@link KDTreeNode#left()}, {@link
 	 * KDTreeNode#right()}, {@link KDTree#getRoot()} etc create new objects in each
 	 * call, instead of re-using existing proxies.
@@ -253,7 +252,8 @@ private String toString( final int node, final String indent, final KDTreeNode<
 	 * {@link KDTreeNode#setNodeIndex(int)} can be used to point the proxy to a
 	 * particular node in the tree.
 	 */
-	public KDTreeNode< T > createNode() {
+	public KDTreeNode< T > createNode()
+	{
 		return new KDTreeNode<>( this );
 	}
 

src/main/java/net/imglib2/kdtree/KDTreeImpl.java

@@ -24,7 +24,7 @@
  *   / \   /
  *  7   8 9
  * </pre>
- *
+ * <p>
  * never like this:
  * <pre>
  *            0
@@ -35,7 +35,7 @@
  *   /         /     /
  *  7         8     9
  * </pre>
- *
+ * <p>
  * By choosing pivots in this way, the tree structure is fully
  * determined. For every node index, the child indices can be calculated
  * without dependent reads. And iff the calculated child index is less
@@ -49,7 +49,8 @@ public class KDTreeImpl
 
 	protected final KDTreePositions positions;
 
-	public KDTreeImpl(final KDTreePositions positions) {
+	public KDTreeImpl( final KDTreePositions positions )
+	{
 		this.numDimensions = positions.numDimensions;
 		this.numPoints = positions.numPoints;
 		this.positions = positions;
@@ -126,8 +127,9 @@ public int splitDimension( final int i )
 		return ( 31 - Integer.numberOfLeadingZeros( i + 1 ) ) % numDimensions;
 	}
 
-	public double getDoublePosition(final int i, final int d) {
-		return positions.get(i, d);
+	public double getDoublePosition( final int i, final int d )
+	{
+		return positions.get( i, d );
 	}
 
 	/**
@@ -138,7 +140,7 @@ public float squDistance( final int i, final float[] pos )
 		float sum = 0;
 		for ( int d = 0; d < numDimensions; ++d )
 		{
-			final float diff = pos[ d ] - ( float ) positions.get(i, d);
+			final float diff = pos[ d ] - ( float ) positions.get( i, d );
 			sum += diff * diff;
 		}
 		return sum;
@@ -152,7 +154,7 @@ public double squDistance( final int i, final double[] pos )
 		double sum = 0;
 		for ( int d = 0; d < numDimensions; ++d )
 		{
-			final double diff = pos[ d ] - positions.get(i, d);
+			final double diff = pos[ d ] - positions.get( i, d );
 			sum += diff * diff;
 		}
 		return sum;
@@ -166,7 +168,7 @@ public double squDistance( final int i, final RealLocalizable pos )
 		double sum = 0;
 		for ( int d = 0; d < numDimensions; ++d )
 		{
-			final double diff = pos.getDoublePosition( d ) - positions.get(i, d);
+			final double diff = pos.getDoublePosition( d ) - positions.get( i, d );
 			sum += diff * diff;
 		}
 		return sum;

src/main/java/net/imglib2/kdtree/KNearestNeighborSearchImpl.java

@@ -121,5 +121,4 @@ public KNearestNeighborSearchImpl copy()
 		System.arraycopy( bestSquDistance, 0, copy.bestSquDistance, 0, bestSquDistance.length );
 		return copy;
 	}
-
 }