build.yml

on:
  push:
    paths:
        - 'CMakeLists.txt'
        - 'dataset/**'
        - 'include/**'
        - 'source/**'
        - 'tests/**'
  pull_request:
    paths:
      - 'CMakeLists.txt'
      - 'dataset/**'
      - 'include/**'
      - 'source/**'
      - 'tests/**'
name: Build 

jobs:
  build_and_test:
    runs-on: ubuntu-20.04
    strategy:
      matrix:
        arch: [x86_64, aarch64]
        cpu_instr: [non_SIMD, SSE2, AVX2, NEON]
        
    steps:
      - uses: actions/checkout@v3
        with:
            submodules: true
      - name: Build trimal for Linux x86_64
        if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'non_SIMD' 
        run: cmake . -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal &&
          ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
      - name: Build trimal for Linux x86_64 and SSE2
        if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'SSE2' 
        run: cmake . -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal &&
          ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
      - name: Build trimal for Linux x86_64 and AVX2
        if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'AVX2' 
        run: cmake . -DDISABLE_SSE2=1 && make && file bin/trimal && file bin/readal &&
          ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh

      - name: Build trimal for Linux aarch64
        if: matrix.arch == 'aarch64' && matrix.cpu_instr == 'non_SIMD'
        uses: uraimo/run-on-arch-action@v2
        with:
          arch: ${{ matrix.arch }}
          distro: ubuntu20.04
          githubToken: ${{ github.token }}
          dockerRunArgs: |
            --volume "${PWD}:/trimal" 
          install: |
            apt-get update -q -y
            apt-get install -q -y cmake make g++ file
          run: |
            cmake . -DDISABLE_NEON=1 -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal &&
            ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
      - name: Build trimal for Linux aarch64 and NEON
        if: matrix.arch == 'aarch64' && matrix.cpu_instr == 'NEON'
        uses: uraimo/run-on-arch-action@v2
        with:
          arch: ${{ matrix.arch }}
          distro: ubuntu20.04
          githubToken: ${{ github.token }}
          dockerRunArgs: |
            --volume "${PWD}:/trimal" 
          install: |
            apt-get update -q -y
            apt-get install -q -y cmake make g++ file
          run: |
            cmake . -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal &&
            ./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh