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1 | 1 | Installation
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2 | 2 | *************
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3 | 3 |
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| 4 | +Version 1.4 |
| 5 | +============ |
| 6 | +The source code is available at the `Github repository <https://github.com/inab/trimal>`_. |
| 7 | +You may `download <https://github.com/inab/trimal/releases/tag/v1.4.1>`_ it or clone it using git:: |
| 8 | + |
| 9 | + $ git clone https://github.com/inab/trimal.git |
| 10 | + |
| 11 | +The simplest way to compile this package is: |
| 12 | + |
| 13 | + 1. Go to the directory containing the package's source code ('source'). |
| 14 | + :: |
| 15 | + |
| 16 | + $ cd trimal/source |
| 17 | + |
| 18 | + 2. Compile the package. |
| 19 | + :: |
| 20 | + |
| 21 | + $ make |
| 22 | + |
| 23 | + 3. Optionally, run trimAl/readAl with the examples into the 'dataset' |
| 24 | + directory to check the correct installation. It should return the original MSA. |
| 25 | + :: |
| 26 | + |
| 27 | + $ cd .. |
| 28 | + $ source/trimal -in dataset/example.004.AA.fasta |
| 29 | + |
| 30 | + |
| 31 | +By default, 'make' compiles the source code of trimAl and readAl in the |
| 32 | +current directory. After that, you can either add to PATH the current |
| 33 | +directory or move these files to '/usr/local/bin' or to '/usr/bin' using |
| 34 | +root privileges. |
| 35 | + |
| 36 | + |
4 | 37 | Version 2.0 (Release candidate)
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5 | 38 | ===============================
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6 | 39 | The source code is available at the `Github repository 2.0_RC branch <https://github.com/inab/trimal/tree/2.0_RC>`_.
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@@ -71,38 +104,6 @@ bin directory. After that, you can either add to PATH the bin directory
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71 | 104 | or move these files to '/usr/local/bin' or to '/usr/bin' using root privileges.
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72 | 105 |
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73 | 106 |
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74 |
| -Version 1.4 |
75 |
| -============ |
76 |
| -The source code is available at the `Github repository <https://github.com/inab/trimal>`_. |
77 |
| -You may `download <https://github.com/inab/trimal/releases/tag/v1.4.1>`_ it or clone it using git:: |
78 |
| - |
79 |
| - $ git clone https://github.com/inab/trimal.git |
80 |
| - |
81 |
| -The simplest way to compile this package is: |
82 |
| - |
83 |
| - 1. Go to the directory containing the package's source code ('source'). |
84 |
| - :: |
85 |
| - |
86 |
| - $ cd trimal/source |
87 |
| - |
88 |
| - 2. Compile the package. |
89 |
| - :: |
90 |
| - |
91 |
| - $ make |
92 |
| - |
93 |
| - 3. Optionally, run trimAl/readAl with the examples into the 'dataset' |
94 |
| - directory to check the correct installation. It should return the original MSA. |
95 |
| - :: |
96 |
| - |
97 |
| - $ cd .. |
98 |
| - $ source/trimal -in dataset/example.004.AA.fasta |
99 |
| - |
100 |
| - |
101 |
| -By default, 'make' compiles the source code of trimAl and readAl in the |
102 |
| -current directory. After that, you can either add to PATH the current |
103 |
| -directory or move these files to '/usr/local/bin' or to '/usr/bin' using |
104 |
| -root privileges. |
105 |
| - |
106 | 107 |
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107 | 108 | Version 1.2
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108 | 109 | ============
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