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nicodr97nicodr97
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Use alpine for arm arch
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‎.github/workflows/build.yml

+16-53
Original file line numberDiff line numberDiff line change
@@ -26,14 +26,13 @@ jobs:
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matrix:
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arch: [x86, x86_64, armv7, aarch64]
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cpu_instr: [non-SIMD, SSE2, auto-selected]
29-
os: [ubuntu, alpine]
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steps:
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- uses: actions/checkout@v3
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with:
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submodules: true
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- name: Setup Alpine Linux for x86
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if: matrix.arch == 'x86' && matrix.os == 'alpine'
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if: matrix.arch == 'x86'
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uses: jirutka/setup-alpine@v1
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with:
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arch: x86
@@ -45,36 +44,36 @@ jobs:
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shell-name: alpine-x86.sh
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- name: Build trimal for Linux x86
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if: matrix.arch == 'x86' && matrix.cpu_instr == 'non-SIMD' && matrix.os == 'alpine'
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if: matrix.arch == 'x86' && matrix.cpu_instr == 'non-SIMD'
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run: cmake . -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
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shell: alpine-x86.sh {0}
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- name: Build trimal for Linux x86 and SSE2
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if: matrix.arch == 'x86' && matrix.cpu_instr == 'SSE2' && matrix.os == 'alpine'
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if: matrix.arch == 'x86' && matrix.cpu_instr == 'SSE2'
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run: cmake . -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
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shell: alpine-x86.sh {0}
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- name: Build trimal for Linux x86 and auto-selected SIMD (AVX2 if available)
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if: matrix.arch == 'x86' && matrix.cpu_instr == 'auto-selected' && matrix.os == 'alpine'
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if: matrix.arch == 'x86' && matrix.cpu_instr == 'auto-selected'
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run: cmake . && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
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shell: alpine-x86.sh {0}
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- name: Build trimal for Linux x86_64
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if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'non-SIMD' && matrix.os == 'ubuntu'
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if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'non-SIMD'
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run: cmake . -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
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- name: Build trimal for Linux x86_64 and SSE2
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if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'SSE2' && matrix.os == 'ubuntu'
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if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'SSE2'
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run: cmake . -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
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- name: Build trimal for Linux x86_64 and auto-selected SIMD (AVX2 if available)
72-
if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'auto-selected' && matrix.os == 'ubuntu'
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if: matrix.arch == 'x86_64' && matrix.cpu_instr == 'auto-selected'
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run: cmake . && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
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- name: Setup Alpine Linux for armv7
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if: matrix.arch == 'armv7' && matrix.os == 'alpine'
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if: matrix.arch == 'armv7'
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uses: jirutka/setup-alpine@v1
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with:
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arch: armv7
@@ -85,55 +84,19 @@ jobs:
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make
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shell-name: alpine-armv7.sh
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- name: Build trimal for Linux armv7 (alpine)
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if: matrix.arch == 'armv7' && matrix.cpu_instr == 'non-SIMD' && matrix.os == 'alpine'
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run: cmake . -D_FILE_OFFSET_BITS=64 -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal &&
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- name: Build trimal for Linux armv7
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if: matrix.arch == 'armv7' && matrix.cpu_instr == 'non-SIMD'
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run: cmake . -DDISABLE_SSE2=1 -DDISABLE_AVX2=1 && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
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shell: alpine-armv7.sh {0}
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- name: Build trimal for Linux armv7 (alpine) and auto-selected SIMD (NEON)
94-
if: matrix.arch == 'armv7' && matrix.cpu_instr == 'auto-selected' && matrix.os == 'alpine'
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run: cmake . -D_FILE_OFFSET_BITS=64 && make && file bin/trimal && file bin/readal &&
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- name: Build trimal for Linux armv7 and auto-selected SIMD (NEON)
93+
if: matrix.arch == 'armv7' && matrix.cpu_instr == 'auto-selected'
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run: cmake . && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
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shell: alpine-armv7.sh {0}
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- name: Build trimal for Linux armv7 (ubuntu)
100-
if: matrix.arch == 'armv7' && matrix.cpu_instr == 'non-SIMD' && matrix.os == 'ubuntu'
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uses: uraimo/run-on-arch-action@v2
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# Emulate ARM architecture since it's not natively supported by GitHub.
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# Warning about image and host platforms not matching may be ignored (https://github.com/uraimo/run-on-arch-action/issues/127#issuecomment-1605691328)
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with:
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arch: ${{ matrix.arch }}
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distro: ubuntu20.04
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githubToken: ${{ github.token }}
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dockerRunArgs: |
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--volume "${PWD}:/trimal"
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install: |
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apt-get update -q -y
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apt-get install -q -y cmake make g++ file
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run: |
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cmake . -D_FILE_OFFSET_BITS=64 -DDISABLE_NEON=1 && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
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- name: Build trimal for Linux armv7 (ubuntu) and auto-selected SIMD (NEON)
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if: matrix.arch == 'armv7' && matrix.cpu_instr == 'auto-selected' && matrix.os == 'ubuntu'
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uses: uraimo/run-on-arch-action@v2
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# Emulate ARM architecture since it's not natively supported by GitHub.
121-
# Warning about image and host platforms not matching may be ignored (https://github.com/uraimo/run-on-arch-action/issues/127#issuecomment-1605691328)
122-
with:
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arch: ${{ matrix.arch }}
124-
distro: ubuntu20.04
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githubToken: ${{ github.token }}
126-
dockerRunArgs: |
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--volume "${PWD}:/trimal"
128-
install: |
129-
apt-get update -q -y
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apt-get install -q -y cmake make g++ file
131-
run: |
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cmake . -D_FILE_OFFSET_BITS=64 && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
134-
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- name: Build trimal for Linux aarch64
136-
if: matrix.arch == 'aarch64' && matrix.cpu_instr == 'non-SIMD' && matrix.os == 'ubuntu'
99+
if: matrix.arch == 'aarch64' && matrix.cpu_instr == 'non-SIMD'
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uses: uraimo/run-on-arch-action@v2
138101
# Emulate ARM architecture since it's not natively supported by GitHub.
139102
# Warning about image and host platforms not matching may be ignored (https://github.com/uraimo/run-on-arch-action/issues/127#issuecomment-1605691328)
@@ -150,7 +113,7 @@ jobs:
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cmake . -DDISABLE_NEON=1 && make && file bin/trimal && file bin/readal &&
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./scripts/generate_trimmed_msas.sh && ./scripts/compare_trimmed_msas.sh
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- name: Build trimal for Linux aarch64 and auto-selected SIMD (NEON)
153-
if: matrix.arch == 'aarch64' && matrix.cpu_instr == 'auto-selected' && matrix.os == 'ubuntu'
116+
if: matrix.arch == 'aarch64' && matrix.cpu_instr == 'auto-selected'
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uses: uraimo/run-on-arch-action@v2
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# Emulate ARM architecture since it's not natively supported by GitHub.
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# Warning about image and host platforms not matching may be ignored (https://github.com/uraimo/run-on-arch-action/issues/127#issuecomment-1605691328)

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