Test only x86_64 AVX2

Author: nicodr97

.github/workflows/build.yml

@@ -24,8 +24,8 @@ jobs:
     runs-on: ubuntu-20.04
     strategy:
       matrix:
-        arch: [x86, x86_64]
-        cpu_instr: [non-SIMD, SSE2, AVX2, NEON, auto-selected]
+        arch: [x86_64]
+        cpu_instr: [AVX2]
 
     steps:
       - uses: actions/checkout@v3

scripts/compare_trimmed_msas.sh

@@ -1,7 +1,7 @@
 methods="gappyout strict strictplus automated1 nogaps noallgaps"
 for method in $methods
 do
-    for msa in test_msas/$method/*14*.fasta
+    for msa in test_msas/$method/*.fasta
     do
         msa_filename=$(basename $msa)
         diff "$msa" "dataset/trimmed_msas/$method/$msa_filename" -q || exit 1

scripts/generate_trimmed_msas.sh

@@ -6,11 +6,6 @@ mkdir test_msas/automated1
 mkdir test_msas/nogaps
 mkdir test_msas/noallgaps
 
-./bin/trimal -in dataset/example.014.AA.EggNOG.COG0591.fasta -gappyout -out test_msas/gappyout/example.014.AA.EggNOG.COG0591.fasta
-./bin/trimal -in dataset/example.014.AA.EggNOG.COG0591.fasta -strict -out test_msas/strict/example.014.AA.EggNOG.COG0591.fasta
-
-exit 1
-
 ./bin/trimal -in dataset/example.004.AA.fasta -gappyout -out test_msas/gappyout/example.004.AA.fasta
 ./bin/trimal -in dataset/example.004.AA.fasta -strict -out test_msas/strict/example.004.AA.fasta
 ./bin/trimal -in dataset/example.004.AA.fasta -strictplus -out test_msas/strictplus/example.004.AA.fasta