We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
If PacBio data is passed in as a fasta file, the @RG annotation is lost, and Arrow gccp will complain
@RG
gcpp ERROR: [pbbam] read group ERROR: basecaller version is too short
Maybe can check for .fasta or fa extension and print a warning. Or hack an acceptable @RG annotation...
.fasta
fa
The text was updated successfully, but these errors were encountered:
Could add guard-rails here to throw an error if the user passes in a fasta file instead of the required bam file:
polishCLR/main.nf
Lines 227 to 236 in d1a1b9f
Sorry, something went wrong.
No branches or pull requests
If PacBio data is passed in as a fasta file, the
@RG
annotation is lost, and Arrow gccp will complainMaybe can check for
.fasta
orfa
extension and print a warning. Or hack an acceptable@RG
annotation...The text was updated successfully, but these errors were encountered: