main.yml

# This is a basic workflow to help you get started with Actions

name: CI
env:
  GITLAB_ACCESS_TOKEN: ${{ secrets.GITLAB_ACCESS_TOKEN }}

# Controls when the workflow will run
on:
  # Triggers the workflow on push or pull request events but only for the "main" branch
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]

  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:

jobs:
  MEPHIT:
    name: Build and test
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v3

      - name: Install dependencies
        run: |
          sudo apt-get update && apt-get install -y -q --no-install-recommends \
            apt-transport-https \
            build-essential \
            ca-certificates \
            curl \
            libssl-dev \
            openssh-client \
            rsync \
            wget \
            git \
            gfortran \
            ninja-build \
            cmake \
            python3 \
            python3-dev \
            python3-pip \
            python3-venv

          sudo apt-get install -y -q --no-install-recommends \
            procps \
            nano \
            vim \
            htop \
            ncdu \
            less \
            gdb \
            cmake-curses-gui

          sudo apt-get install -y -q --no-install-recommends \
            pkg-config \
            libsuitesparse-dev \
            libopenblas-dev \
            libsuperlu-dev \
            libhdf5-dev \
            libhdf5-openmpi-dev \
            libnetcdf-dev \
            libnetcdff-dev \
            libfftw3-dev \
            libgsl-dev \
            libopenmpi-dev \
            libscalapack-openmpi-dev \
            libpcre3-dev \
            libreadline-dev \
            h5utils \
            hdf5-tools \
            netcdf-bin

          sudo apt-get install -y -q --no-install-recommends \
            python3-wheel python3-setuptools \
            # Shell and file formats
            python3-ipython jupyter python3-sphinx python3-matplotlib \
            python3-openpyxl python3-xlrd python3-h5py python3-netcdf4 \
            # Scientific computing
            python3-sympy python3-uncertainties python3-numpy python3-scipy \
            python3-numba \
            # Statistics
            python3-pandas python3-sklearn python3-torch \
            # For OMFIT
            python3-boto3 python3-lmfit python3-configobj python3-dill \
            python3-pyodbc python3-pyotp \
            # Misc
            fortran-language-server python3-tqdm python3-pytest \
            python3-mpi4py python3-skbuild

          mkdir -p ~/venv
          python3 -m venv --system-site-packages ~/venv/plasma
          python -m pip install pylance black f90wrap

          echo 'export PATH=~/bin:$PATH' >> ~/.bashrc && \
          echo 'export LD_LIBRARY_PATH=~/bin:$LD_LIBRARY_PATH' >> ~/.bashrc && \
          echo 'export STELLOPT_PATH="/src/STELLOPT"' >> ~/.bashrc && \
          echo 'export MACHINE="ubuntu"' >> ~/.bashrc && \
          echo 'export OMPI_ALLOW_RUN_AS_ROOT=1' >> ~/.bashrc && \
          echo 'export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1' >> ~/.bashrc && \
          echo '. ~/venv/plasma/bin/activate' >> ~/.bashrc

      - name: Initialize Gitlab access token
        run: |
          git config --global credential.helper store
          echo "https://x-access-token:$GITLAB_ACCESS_TOKEN@gitlab.tugraz.at" >> ~/.git-credentials

      - name: libneo
        run: |
          git clone https://github.com/itpplasma/libneo.git

      - name: NEO-2
        run: |
          git clone https://github.com/itpplasma/NEO-2.git

      - name: NEO-RT
        run: |
          mkdir contrib
          cd contrib
          git clone git@github.com:itpplasma/quadpack
          git clone git@github.com:itpplasma/vode
          cd ..
          git clone git@github.com:itpplasma/spline
          git clone git@github.com:itpplasma/BOOZER_MAGFIE
          git clone git@github.com:itpplasma/NEO-RT

      - name: SIMPLE
        run: |
          git clone git@github.com:itpplasma/SIMPLE

      - name: GORILLA
        run: |
          git clone  https://github.com/itpplasma/GORILLA.git

      - name: MEPHIT
        run: |
          git clone https://gitlab.tugraz.at/plasma/codes/MEPHIT.git

      - name: KIM
        run: |
          git clone https://gitlab.tugraz.at/plasma/codes/MEPHIT.git