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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(.DollarNames,FactorisedExperiment)
S3method(.DollarNames,ModularExperiment)
S3method(.DollarNames,ReducedExperiment)
export(FactorisedExperiment)
export(ModularExperiment)
export(ReducedExperiment)
export(assessSoftThreshold)
export(assignments)
export(associateComponents)
export(calcEigengenes)
export(componentNames)
export(dendrogram)
export(estimateFactors)
export(estimateStability)
export(featureNames)
export(getAlignedFeatures)
export(getCentrality)
export(getCommonFeatures)
export(getGeneIDs)
export(getMsigdbT2G)
export(identifyModules)
export(loadings)
export(modulePreservation)
export(plotCommonFeatures)
export(plotDendro)
export(plotModulePreservation)
export(plotStability)
export(projectData)
export(reduced)
export(runEnrich)
export(runICA)
export(runWGCNA)
export(sampleNames)
export(stability)
exportClasses(FactorisedExperiment)
exportClasses(ModularExperiment)
exportClasses(ReducedExperiment)
exportMethods("ROWNAMES<-")
exportMethods("[")
exportMethods("[<-")
exportMethods("assignments<-")
exportMethods("colnames<-")
exportMethods("componentNames<-")
exportMethods("dendrogram<-")
exportMethods("featureNames<-")
exportMethods("loadings<-")
exportMethods("moduleNames<-")
exportMethods("names<-")
exportMethods("reduced<-")
exportMethods("rownames<-")
exportMethods("sampleNames<-")
exportMethods("stability<-")
exportMethods(assignments)
exportMethods(calcEigengenes)
exportMethods(cbind)
exportMethods(componentNames)
exportMethods(dendrogram)
exportMethods(dim)
exportMethods(featureNames)
exportMethods(getAlignedFeatures)
exportMethods(getCentrality)
exportMethods(getGeneIDs)
exportMethods(loadings)
exportMethods(moduleNames)
exportMethods(nComponents)
exportMethods(nFeatures)
exportMethods(nModules)
exportMethods(nSamples)
exportMethods(plotDendro)
exportMethods(predict)
exportMethods(projectData)
exportMethods(rbind)
exportMethods(reduced)
exportMethods(runEnrich)
exportMethods(sampleNames)
exportMethods(show)
exportMethods(stability)
import(BiocParallel)
import(S4Vectors)
import(SummarizedExperiment)
import(biomaRt)
import(ggplot2)
import(ica)
import(methods)
import(moments)
import(patchwork)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(lme4,lmerControl)
importFrom(lmerTest,lmer)
importFrom(utils,.DollarNames)
importFrom(utils,capture.output)