2021_Burger_et_al_scRNAseq

Data and code for mouse scRNA-seq analysis in:

Burger et al. Antigen Dominance Hierarchies Shape TCF1+ Progenitor CD8 T Cell Phenotypes in Tumors. Cell (2021)

For the human scRNA-seq data and code please refer to the following repository: https://github.mit.edu/AJBhutkarCompBioGroup/2021_Burger_et_al_human_scRNAseq

Raw data can be accessed with GEO: GSE164177

If there are any technical problems or questions, please submit an "Issue".

To reproduce clonotype clustering, please see "S4A" of the figures notebook.