Skip to content

Commit a03f2c0

Browse files
Initial commit
1 parent 609fe4a commit a03f2c0

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

75 files changed

+16071
-2
lines changed

.gitignore

Lines changed: 57 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,57 @@
1+
# Byte-compiled / optimized / DLL files
2+
__pycache__/
3+
*.py[cod]
4+
5+
# C extensions
6+
*.so
7+
8+
# Distribution / packaging
9+
.Python
10+
env/
11+
build/
12+
develop-eggs/
13+
dist/
14+
downloads/
15+
eggs/
16+
.eggs/
17+
lib/
18+
lib64/
19+
parts/
20+
sdist/
21+
var/
22+
.idea/
23+
*.egg-info/
24+
.installed.cfg
25+
*.egg
26+
27+
# PyInstaller
28+
# Usually these files are written by a python script from a template
29+
# before PyInstaller builds the exe, so as to inject date/other infos into it.
30+
*.manifest
31+
*.spec
32+
33+
# Installer logs
34+
pip-log.txt
35+
pip-delete-this-directory.txt
36+
37+
# Unit test / coverage reports
38+
htmlcov/
39+
.tox/
40+
.coverage
41+
.coverage.*
42+
.cache
43+
nosetests.xml
44+
coverage.xml
45+
46+
# Translations
47+
*.mo
48+
*.pot
49+
50+
# Django stuff:
51+
*.log
52+
53+
# Sphinx documentation
54+
docs/_build/
55+
56+
# PyBuilder
57+
target/

MANIFEST.in

Lines changed: 3 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,3 @@
1+
recursive-include pyneurgen *
2+
3+
recursive-exclude pyneurgen ?~ *coverage

PKG-INFO

Lines changed: 36 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,36 @@
1+
Metadata-Version: 1.1
2+
Name: pyneurgen
3+
Version: 0.3.1
4+
Summary: Python Neural Genetic Hybrids
5+
Home-page: http://pyneurgen/sourceforge.net
6+
Author: Don Smiley
7+
Author-email: [email protected]
8+
License: GPL
9+
Description:
10+
This package provides the Python "pyneurgen" module, which contains several
11+
classes for implementing grammatical evolution, a form of genetic
12+
programming, and classes for neural networks. These classes enable the
13+
creation of hybrid models that can embody the strengths of grammatical
14+
evolution and neural networks.
15+
16+
While neural networks can be adept at solving non-linear problems, some
17+
problems remain beyond reach. For example, a difficult search space can
18+
cause suboptimal solutions to be reached. Also, multiobjective problems
19+
become extremely difficult, if not impossible. With genetic algorithms, a
20+
more thorough search can be made.
21+
Keywords: grammatical evolution programming neural networks genetic algorithms
22+
Platform: UNKNOWN
23+
Classifier: Development Status :: 3 - Alpha
24+
Classifier: Environment :: Console
25+
Classifier: Intended Audience :: Developers
26+
Classifier: Intended Audience :: Science/Research
27+
Classifier: License :: OSI Approved :: GNU General Public License (GPL)
28+
Classifier: Natural Language :: English
29+
Classifier: Operating System :: OS Independent
30+
Classifier: Programming Language :: Python :: 2.6
31+
Classifier: Programming Language :: Python :: 2.7
32+
Classifier: Topic :: Adaptive Technologies
33+
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
34+
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
35+
Classifier: Topic :: Scientific/Engineering :: Mathematics
36+
Classifier: Topic :: Software Development :: Libraries :: Python Modules

README.md

Lines changed: 0 additions & 2 deletions
This file was deleted.

README.txt

Lines changed: 52 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,52 @@
1+
Python Neural Genetic Hybrids -- Release 0.3
2+
=================================================
3+
4+
This package provides the Python "pyneurgen" module, which contains several
5+
classes for implementing grammatical evolution, a form of genetic programming,
6+
and classes for neural networks. These classes enable the creation of hybrid
7+
models that can embody the strengths.
8+
9+
While neural networks can be adept at solving non-linear problems, some
10+
problems remain beyond reach. For example, a difficult search space can cause
11+
suboptimal solutions to be reached. Also, multiobjective problems become
12+
extremely difficult, if not impossible. With genetic algorithms, a more
13+
thorough search can be made.
14+
15+
This latest version has additional features added to enable the construction
16+
of recurrent neural networks easier. Recurrent neural networks are used
17+
with time series data, because the structure of the network enables a
18+
memory of past events to be included in the process.
19+
20+
There is an additional helper class that configures such recurrent network
21+
types as Elman Simple Recurrent Network, Jordan style recurrent networks, and
22+
NARX (Non-Linear AutoRegressive with eXogenous inputs) recurrent networks. And,
23+
there are instructions on making your own structures for your unique
24+
requirements.
25+
26+
27+
How to install this package
28+
===========================
29+
30+
python setup.py install
31+
32+
33+
Author and license information
34+
==============================
35+
36+
Copyright (C) 2012 Don Smiley <[email protected]>
37+
38+
This program is free software: you can redistribute it and/or modify
39+
it under the terms of the GNU General Public License as published by
40+
the Free Software Foundation, either version 3 of the License, or
41+
(at your option) any later version.
42+
43+
This program is distributed in the hope that it will be useful,
44+
but WITHOUT ANY WARRANTY; without even the implied warranty of
45+
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
46+
GNU General Public License for more details.
47+
48+
You should have received a copy of the GNU General Public License
49+
along with this program. If not, see <http://www.gnu.org/licenses/>.
50+
51+
See the LICENSE file included in this archive
52+

pyneurgen/Makefile

Lines changed: 153 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,153 @@
1+
# Makefile for Sphinx documentation
2+
#
3+
4+
# You can set these variables from the command line.
5+
SPHINXOPTS =
6+
SPHINXBUILD = sphinx-build
7+
PAPER =
8+
BUILDDIR = _build
9+
10+
# Internal variables.
11+
PAPEROPT_a4 = -D latex_paper_size=a4
12+
PAPEROPT_letter = -D latex_paper_size=letter
13+
ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
14+
# the i18n builder cannot share the environment and doctrees with the others
15+
I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
16+
17+
.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext
18+
19+
help:
20+
@echo "Please use \`make <target>' where <target> is one of"
21+
@echo " html to make standalone HTML files"
22+
@echo " dirhtml to make HTML files named index.html in directories"
23+
@echo " singlehtml to make a single large HTML file"
24+
@echo " pickle to make pickle files"
25+
@echo " json to make JSON files"
26+
@echo " htmlhelp to make HTML files and a HTML help project"
27+
@echo " qthelp to make HTML files and a qthelp project"
28+
@echo " devhelp to make HTML files and a Devhelp project"
29+
@echo " epub to make an epub"
30+
@echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
31+
@echo " latexpdf to make LaTeX files and run them through pdflatex"
32+
@echo " text to make text files"
33+
@echo " man to make manual pages"
34+
@echo " texinfo to make Texinfo files"
35+
@echo " info to make Texinfo files and run them through makeinfo"
36+
@echo " gettext to make PO message catalogs"
37+
@echo " changes to make an overview of all changed/added/deprecated items"
38+
@echo " linkcheck to check all external links for integrity"
39+
@echo " doctest to run all doctests embedded in the documentation (if enabled)"
40+
41+
clean:
42+
-rm -rf $(BUILDDIR)/*
43+
44+
html:
45+
$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
46+
@echo
47+
@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
48+
49+
dirhtml:
50+
$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
51+
@echo
52+
@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
53+
54+
singlehtml:
55+
$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
56+
@echo
57+
@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."
58+
59+
pickle:
60+
$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
61+
@echo
62+
@echo "Build finished; now you can process the pickle files."
63+
64+
json:
65+
$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
66+
@echo
67+
@echo "Build finished; now you can process the JSON files."
68+
69+
htmlhelp:
70+
$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
71+
@echo
72+
@echo "Build finished; now you can run HTML Help Workshop with the" \
73+
".hhp project file in $(BUILDDIR)/htmlhelp."
74+
75+
qthelp:
76+
$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
77+
@echo
78+
@echo "Build finished; now you can run "qcollectiongenerator" with the" \
79+
".qhcp project file in $(BUILDDIR)/qthelp, like this:"
80+
@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/PyNeurGen.qhcp"
81+
@echo "To view the help file:"
82+
@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/PyNeurGen.qhc"
83+
84+
devhelp:
85+
$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
86+
@echo
87+
@echo "Build finished."
88+
@echo "To view the help file:"
89+
@echo "# mkdir -p $$HOME/.local/share/devhelp/PyNeurGen"
90+
@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/PyNeurGen"
91+
@echo "# devhelp"
92+
93+
epub:
94+
$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
95+
@echo
96+
@echo "Build finished. The epub file is in $(BUILDDIR)/epub."
97+
98+
latex:
99+
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
100+
@echo
101+
@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
102+
@echo "Run \`make' in that directory to run these through (pdf)latex" \
103+
"(use \`make latexpdf' here to do that automatically)."
104+
105+
latexpdf:
106+
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
107+
@echo "Running LaTeX files through pdflatex..."
108+
$(MAKE) -C $(BUILDDIR)/latex all-pdf
109+
@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
110+
111+
text:
112+
$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
113+
@echo
114+
@echo "Build finished. The text files are in $(BUILDDIR)/text."
115+
116+
man:
117+
$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
118+
@echo
119+
@echo "Build finished. The manual pages are in $(BUILDDIR)/man."
120+
121+
texinfo:
122+
$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
123+
@echo
124+
@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
125+
@echo "Run \`make' in that directory to run these through makeinfo" \
126+
"(use \`make info' here to do that automatically)."
127+
128+
info:
129+
$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
130+
@echo "Running Texinfo files through makeinfo..."
131+
make -C $(BUILDDIR)/texinfo info
132+
@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."
133+
134+
gettext:
135+
$(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale
136+
@echo
137+
@echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."
138+
139+
changes:
140+
$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
141+
@echo
142+
@echo "The overview file is in $(BUILDDIR)/changes."
143+
144+
linkcheck:
145+
$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
146+
@echo
147+
@echo "Link check complete; look for any errors in the above output " \
148+
"or in $(BUILDDIR)/linkcheck/output.txt."
149+
150+
doctest:
151+
$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
152+
@echo "Testing of doctests in the sources finished, look at the " \
153+
"results in $(BUILDDIR)/doctest/output.txt."

pyneurgen/__init__.py

Whitespace-only changes.

pyneurgen/demo/.directory

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,4 @@
1+
[Dolphin]
2+
Timestamp=2012,2,28,8,17,19
3+
Version=2
4+
ViewMode=1

0 commit comments

Comments
 (0)