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FIJI Jython Scripting

Useful functions and snippets for FIJI scripting using Jython.

  • useful_functions_fiji_jython.py: various functions using the ImageJ API and MorpholibJ API. Examples:
    • Reading files using Bioformats API
    • Getting measurements from label images using MorpholibJ API
  • code folder: contains various fully developed scripts
  • snippets folder: many code snippets to test functions during code development.