Merge branch 'main' of https://github.com/jhudsl/Reproducibility_in_Cancer_Informatics into main

Author: jhudsl-robot

config_automation.yml

@@ -12,6 +12,8 @@ spell-check: yes
 style-code: yes
 # Test build the docker image if any docker-relevant files have been changed
 docker-test: no
+# Should the book_txt be generated?
+make_book_txt: yes 
 
 ##### Renderings run upon merge to main branch #####
 # Rendering each platform's content

docs/no_toc/404.html

@@ -315,7 +315,7 @@ <h1>Page not found</h1>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/about-the-authors.html

@@ -489,7 +489,7 @@ <h1>About the Authors</h1>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/code-review.html

@@ -410,7 +410,7 @@ <h3>References</h3>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/defining-reproducibility.html

@@ -390,7 +390,7 @@ <h3>References</h3>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/documenting-analyses.html

@@ -421,7 +421,7 @@ <h2><span class="header-section-number">8.5</span> Exercise 2: Write a README fo
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
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docs/no_toc/index.html

@@ -328,7 +328,7 @@ <h2><span class="header-section-number">0.1</span> Available course formats</h2>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/introduction.html

@@ -361,7 +361,7 @@ <h3>References</h3>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/making-your-project-open-source-with-github.html

@@ -386,7 +386,7 @@ <h2><span class="header-section-number">4.3</span> Exercise: Set up a project on
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/managing-package-versions.html

@@ -488,7 +488,7 @@ <h3>References</h3>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/organizing-your-project.html

@@ -466,7 +466,7 @@ <h3>References</h3>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/references.html

@@ -501,7 +501,7 @@ <h1>References</h1>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/using-notebooks.html

@@ -515,7 +515,7 @@ <h3>References</h3>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>

docs/no_toc/writing-durable-code.html

@@ -988,7 +988,7 @@ <h3>References</h3>
 <hr>
 <center>
 <div class="container">
-  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=intro_to_reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
+  <iframe class="responsive-iframe" src="https://c-savonen.shinyapps.io/widget-survey/?course_name=reproducibility" style="width: 400px; height: 220px; overflow: auto;"></iframe>
 </div>
   </div>
 </center>