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.gitignore
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############################## HEADER ##########################################
# Repository's ignore list.
################################################################################
# Ignore repository's general files.
#.gitignore
#.dockerignore
#Dockerfile
#README.md
#LICENSE
#CONTRIBUTING
#NEWS
# Ignore repository's general folders.
#scripts/
#src/
#lib/
#include/
bin/
#doc/
#docker/
#cloud/
#templates/
#modules/
#misc/
deps/
packs/
build/
test/
t/
# Ignore general doc, building, timestamp and log files.
#*.tex
#*.md
#*.ac
#*.am
#*.ini
#*.conf
#*.tt
*.[oa]
*.yml
*.log
*.swp
*~
*.tar.gz
timestamp*
# Ignore code files. (Don't do that!)
#*.mk
#*.c
#*.h
#*.pl
#*.py
#*.R
# Don't ignore general defaults configuration file.
!defaults.yml
!config.yml
!aws.yml
# Ignore runtime structural folders.
config/
inputs/
outputs/
assets/
reference/
annotation/
extra/
tmp/
# Ignore repository's specific folders.
pocket/
capsule/
MELTv2.1.4/
bowtie2-2.3.4.1/
list.txt