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Update utils.py
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utils.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -144,7 +144,7 @@ def _read_ss(ss_fh, binary, unlab, ylab, log):
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binary = False
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old_cols = ["CHR", "BP", "SNP", "A1", "A2"] + (["EAF"] if ylab else []) + ["Z"] + (["N_case", "N_control"] if binary else ["N"])
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147-
z = const_dict['Z_YHAT_UNLAB'] if unlab else const_dict['Z']
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z = const_dict['Z_Y_LAB'] if ylab else const_dict['Z']
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new_cols = [const_dict['CHR'], const_dict['BP'], const_dict['SNP'], const_dict['A1'], const_dict['A2']] + ([const_dict['EAF']] if ylab else []) + [z]
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if unlab:
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if binary:
@@ -192,9 +192,9 @@ def _merge_match_a1a2(ss1, ss2):
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.select(~pl.selectors.by_name(const_dict['CHR'] + 'x', const_dict['BP'] + 'x')) \
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.alleles.filter_snps(alleles_list)
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195-
if const_dict['Z_Y_LAB'] not in ss1.columns: # first merge between ss
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if const_dict['Z_YHAT_UNLAB'] not in ss1.columns: # first merge between ss
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ss = ss.alleles.align_alleles_z(alleles_list, const_dict['Z']) \
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.rename({const_dict['Z']: const_dict['Z_Y_LAB']})
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.rename({const_dict['Z']: const_dict['Z_YHAT_UNLAB']})
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else:
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ss = ss.alleles.align_alleles_z(alleles_list, const_dict['Z']) \
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.rename({const_dict['Z']: const_dict['Z_YHAT_LAB']})

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