Skip to content

Latest commit

 

History

History
25 lines (15 loc) · 972 Bytes

README.md

File metadata and controls

25 lines (15 loc) · 972 Bytes

CytoKegg

CytoKegg is a Cytoscape 3.4.0 app designed to import KEGG pathways to Cytoscape.

Features

  • Search and import KEGG pathways
  • Find KEGG pathways present in a given network.

Latest Release

Download the latest release here.

Usage

To search and import a KEGG pathway to Cytoscape simply go to Apps > CytoKegg > Search Pathways. Once there, select the target organism, type a pathway title and the click search. After that, select the target pathway and click open.

Similarly, to find KEGG pathways in a given network, go to Apps > CytoKegg > Find Pathways in Network. Once there select the network, the field containing your identifiers, the identifier type and click search.

Supported identifiers : uniprot, ncbi-proteinid, ncbi-geneid.

Contributing

If you want to help and add a new feature, just create a new pull request to merge in the cytoscape_3.4.0 branch.