From 4afbe97a6ecacfc98775d73b1e52768d3af0cee3 Mon Sep 17 00:00:00 2001
From: Jody Phelan <jody.phelan@lshtm.ac.uk>
Date: Sun, 16 Feb 2025 11:15:48 +0100
Subject: [PATCH] update db scema version

---
 db/tbdb.variables.json | 50 +-----------------------------------------
 tb-profiler            |  2 +-
 2 files changed, 2 insertions(+), 50 deletions(-)

diff --git a/db/tbdb.variables.json b/db/tbdb.variables.json
index 65e5fb0..2072257 100644
--- a/db/tbdb.variables.json
+++ b/db/tbdb.variables.json
@@ -1,49 +1 @@
-{
-  "db-schema-version": "1.1.0",
-  "snpEff_db": "Mycobacterium_tuberculosis_h37rv",
-  "drugs": [
-    "rifampicin",
-    "isoniazid",
-    "ethambutol",
-    "pyrazinamide",
-    "moxifloxacin",
-    "levofloxacin",
-    "bedaquiline",
-    "delamanid",
-    "pretomanid",
-    "linezolid",
-    "streptomycin",
-    "amikacin",
-    "kanamycin",
-    "capreomycin",
-    "clofazimine",
-    "ethionamide",
-    "para-aminosalicylic_acid",
-    "cycloserine"
-  ],
-  "tb-profiler-version": ">=6.0.0,<7.0.0",
-  "version": {
-    "name": "tbdb",
-    "repo": "git@github.com:jodyphelan/tbdb.git",
-    "branch": "tbdb",
-    "commit": "7066eb43",
-    "status": "clean",
-    "author": "Jody Phelan",
-    "date": "Fri Feb 14 09:41:10 2025 +0100",
-    "db-schema-version": "1.1.0",
-    "tb-profiler-version": ">=6.0.0,<7.0.0"
-  },
-  "amplicon": false,
-  "files": {
-    "ref": "tbdb.fasta",
-    "gff": "tbdb.gff",
-    "bed": "tbdb.bed",
-    "json_db": "tbdb.dr.json",
-    "variables": "tbdb.variables.json",
-    "spoligotype_spacers": "tbdb.spoligotype_spacers.txt",
-    "spoligotype_annotations": "tbdb.spoligotype_list.csv",
-    "bedmask": "tbdb.mask.bed",
-    "rules": "tbdb.rules.yml",
-    "barcode": "tbdb.barcode.bed"
-  }
-}
+{"db-schema-version": "2.0.0", "snpEff_db": "Mycobacterium_tuberculosis_h37rv", "drugs": ["rifampicin", "isoniazid", "ethambutol", "pyrazinamide", "moxifloxacin", "levofloxacin", "bedaquiline", "delamanid", "pretomanid", "linezolid", "streptomycin", "amikacin", "kanamycin", "capreomycin", "clofazimine", "ethionamide", "para-aminosalicylic_acid", "cycloserine"], "tb-profiler-version": ">=6.6.0,<7.0.0", "version": {"name": "tbdb", "repo": "git@github.com:jodyphelan/tbdb.git", "branch": "tbdb", "commit": "3ed1cb99", "status": "clean", "author": "Jody Phelan", "date": "Sun Feb 16 11:08:45 2025 +0100", "db-schema-version": "2.0.0", "tb-profiler-version": ">=6.6.0,<7.0.0"}, "amplicon": false, "files": {"ref": "tbdb.fasta", "gff": "tbdb.gff", "bed": "tbdb.bed", "json_db": "tbdb.dr.json", "variables": "tbdb.variables.json", "spoligotype_spacers": "tbdb.spoligotype_spacers.txt", "spoligotype_annotations": "tbdb.spoligotype_list.csv", "bedmask": "tbdb.mask.bed", "rules": "tbdb.rules.yml", "barcode": "tbdb.barcode.bed"}}
\ No newline at end of file
diff --git a/tb-profiler b/tb-profiler
index 8c79a38..28844bc 100644
--- a/tb-profiler
+++ b/tb-profiler
@@ -35,7 +35,7 @@ discovered_plugins = {
 
 __softwarename__ = 'tbprofiler'
 __default_db_dir__ = f'{sys.base_prefix}/share/{__softwarename__}'
-__compatible_db_schema_version__ = '1.0.0'
+__compatible_db_schema_version__ = '2.0.0'
 
 @atexit.register
 def cleanup():