diff --git a/.DS_Store b/.DS_Store
deleted file mode 100644
index ee60853..0000000
Binary files a/.DS_Store and /dev/null differ
diff --git a/.Rbuildignore b/.Rbuildignore
deleted file mode 100644
index b46f55f..0000000
--- a/.Rbuildignore
+++ /dev/null
@@ -1,5 +0,0 @@
-^.*\.Rproj$
-^\.Rproj\.user$
-^\.github$
-^doc$
-^Meta$
diff --git a/.gitignore b/.gitignore
index ed47a3d..be6819e 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,4 @@
+scLANE.Rproj
 .Rproj.user
 .Rhistory
 .RData
diff --git a/R/.DS_Store b/R/.DS_Store
deleted file mode 100644
index 5008ddf..0000000
Binary files a/R/.DS_Store and /dev/null differ
diff --git a/R/GetResultsDE.R b/R/getResultsDE.R
similarity index 100%
rename from R/GetResultsDE.R
rename to R/getResultsDE.R
diff --git a/R/ModelLRT.R b/R/modelLRT.R
similarity index 100%
rename from R/ModelLRT.R
rename to R/modelLRT.R
diff --git a/codecov.yml b/codecov.yml
deleted file mode 100644
index bb2358a..0000000
--- a/codecov.yml
+++ /dev/null
@@ -1,20 +0,0 @@
-comment: false
-language: R
-sudo: false
-token: 22c87571-03cf-4f2e-a913-0bdf858e606b
-cache: packages
-after_success:
-- Rscript -e 'covr::codecov()'
-
-coverage:
-  status:
-    project:
-      default:
-        target: auto
-        threshold: 1%
-        informational: true
-    patch:
-      default:
-        target: auto
-        threshold: 1%
-        informational: true
diff --git a/inst/.DS_Store b/inst/.DS_Store
deleted file mode 100644
index 366ba3e..0000000
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diff --git a/inst/rmarkdown/.DS_Store b/inst/rmarkdown/.DS_Store
deleted file mode 100644
index 72fada9..0000000
Binary files a/inst/rmarkdown/.DS_Store and /dev/null differ
diff --git a/inst/rmarkdown/templates/.DS_Store b/inst/rmarkdown/templates/.DS_Store
deleted file mode 100644
index cde3e62..0000000
Binary files a/inst/rmarkdown/templates/.DS_Store and /dev/null differ
diff --git a/inst/rmarkdown/templates/Bacher_Group_HTML/.DS_Store b/inst/rmarkdown/templates/Bacher_Group_HTML/.DS_Store
deleted file mode 100644
index a5921d1..0000000
Binary files a/inst/rmarkdown/templates/Bacher_Group_HTML/.DS_Store and /dev/null differ
diff --git a/scLANE.Rproj b/scLANE.Rproj
deleted file mode 100644
index 497f8bf..0000000
--- a/scLANE.Rproj
+++ /dev/null
@@ -1,20 +0,0 @@
-Version: 1.0
-
-RestoreWorkspace: Default
-SaveWorkspace: Default
-AlwaysSaveHistory: Default
-
-EnableCodeIndexing: Yes
-UseSpacesForTab: Yes
-NumSpacesForTab: 2
-Encoding: UTF-8
-
-RnwWeave: Sweave
-LaTeX: pdfLaTeX
-
-AutoAppendNewline: Yes
-StripTrailingWhitespace: Yes
-
-BuildType: Package
-PackageUseDevtools: Yes
-PackageInstallArgs: --no-multiarch --with-keep.source