run_association_tests.pbs

## submit with qsub -V run_association_tests.pbs
#!/bin/sh
#PBS -S /bin/bash
#PBS -l nodes=1:ppn=1,mem=16gb,walltime=2:00:00
#PBS -m bae
## replace following with your email address
#PBS -M shin@lunenfeld.ca
#PBS -N run_association_tests
#PBS -o run_association_tests.out
#PBS -e run_association_tests.err

echo "Running on host: " `hostname`
echo "Changing to directory from which script was submitted."
cd $PBS_O_WORKDIR
echo "Current working directory is now: " `pwd`

# Print some useful environment variables.  This are also available to your 
# program if you submitted your job with the -V option.
echo "This job was submitted by user: $PBS_O_LOGNAME"
echo "This job was submitted to host: $PBS_O_HOST"
echo "This job was submitted to queue: $PBS_O_QUEUE"
echo "PBS working directory: $PBS_O_WORKDIR"
echo "PBS job id: $PBS_JOBID"
echo "PBS array: $PBS_ARRAYID"
echo "PBS job name: $PBS_JOBNAME"
echo "PBS environment: $PBS_ENVIRONMENT"
echo " "
echo "This script is running on stat-cl node `hostname` "
echo "Job started on: " `date`

##################################################################
# Commands to run the job

/software/R-3.0.0/bin/R --vanilla -f /home/bulllab/gaw18/gaw19/jshin/scripts/run_association_tests.r